EY650155

Overview
NameEY650155
Unique NameEY650155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650155 vs. ExPASy Swiss-Prot
Match: VPS18_DANRE (Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 7.452e-28
Identity = 67/191 (35.08%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   72 VKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVHAEAAFATKDFHRAASFYAKI-NYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRL 638
            VKP S+ ++++HFLLL+ ++V+ +  ++ Q++ E  F +   ++ + I     D   G+ + Y + ++F+  +  E RD+W++Y++M ++  A   C+D P   D V    AE  F  K +  +A  YA   NY   FEEI LKFI   +++AL+ FL++KL NL   +K QIT++ TW TELYL+++ +L
Sbjct:  323 VKPISIVLTQFHFLLLLPDRVRGICTLNGQVVHEDVFPEKFGTLQKMI----KDPITGLVWIYTEKAVFRYHIQKEARDVWQMYMNMNKFDLAKEYCKDRPECLDMVLAKEAEHCFQNKRYLESAKCYALTQNY---FEEIALKFIEAKQEEALKEFLIKKLVNLKPSEKTQITLLVTWLTELYLNRLGQL 506          
BLAST of EY650155 vs. ExPASy Swiss-Prot
Match: VPS18_HUMAN (Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.904e-25
Identity = 69/214 (32.24%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   18 CGK-QALLSYSKLSEGAEAVKPGS-----MAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVHAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRL 638
            CG+  +LLS  ++ E  E V PG+     + ++++HFLLL+ ++V+ V  ++ Q++    F +    +      +  D++ G  +AY + ++F+  V  E RD+W+ YLDM  +  A   CR+ P   D V    A+  F  + +  +A  YA       FEEI LKF+   +++AL  FL RKL +L   ++ Q T+++TW TELYL ++  L
Sbjct:  299 CGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFLEKFGPLKH----MVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQSY--FEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGAL 506          
BLAST of EY650155 vs. ExPASy Swiss-Prot
Match: VPS18_MOUSE (Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.526e-24
Identity = 69/219 (31.51%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   18 CGK-QALLSYSKLSEGAEAVKPGS-----MAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVHAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDD 653
            CG+  +LLS  ++ E    V PG+     + ++++HFLLL+ ++V+ V  ++ Q++    F +    +      +  D++ G  +AY + ++F+  V  E RD+W+ YLDM  +  A   CR+ P   D V    A+  F    +  +A  YA       FEEI LKF+   +++AL  FL RKL  L   ++ Q T+++TW TELYL ++  L  + D
Sbjct:  299 CGRPDSLLSEERVWEYPAGVGPGANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFLEKFGPLRH----MVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQHRYLESARCYALTQSY--FEEIALKFLEARQEEALAEFLQRKLAGLKPTERTQATLLTTWLTELYLSRLGALQGDPD 511          
BLAST of EY650155 vs. ExPASy Swiss-Prot
Match: PEP3_SCHPO (Vacuolar membrane protein pep3 OS=Schizosaccharomyces pombe GN=pep3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.034e-17
Identity = 59/207 (28.50%), Postives = 109/207 (52.66%), Query Frame = 3
Query:   84 SMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVHAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTAL--ENRKSEYQSIMR 698
            +M ++ +H   L  + + +VNR++ +   E    + + S    I+GLC D     ++ Y  +S+ ++ VN+E R+   V+L+  ++  AL        R+ V + +AE     +++ RAA+ YA+   + S EE+ LKFI ++++D LR +L +KL +     K Q +++  W  EL L K+N L  ++   L  EN   + Q + R
Sbjct:  307 NMILTSFHLAFLDLDTLYIVNRVNGK---ESYQQRVNLSPHEEILGLCCDHEKNTYWLYTTDSLHELVVNNETREASLVFLEKGDFEKALECANTAKVRNTVLVGYAEFLMEHEEYERAATLYAET--LKSVEEVALKFIELNQKDVLRLYLWKKLRSYKSTMKIQKSLLVNWLLELMLAKLNSLDEKERLELFPENVMQQRQQVQR 508          
BLAST of EY650155 vs. ExPASy Swiss-Prot
Match: VPS18_DROME (Vacuolar protein sorting-associated protein 18 homolog OS=Drosophila melanogaster GN=dor PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 5.010e-16
Identity = 58/217 (26.73%), Postives = 108/217 (49.77%), Query Frame = 3
Query:   78 PGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALAN-CRDPLQRDQVYLVHAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKL----------DNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRKSEYQSIM 695
            P +  ++EYH +LL  + V+ +  ++++ + +  FD+         + +  D   G  Y Y   ++F + V  E R++W++YLD  +Y  A A+   DP     V    A+AAFA   +  AA +YA+ +   SFEE+ LKF+ + ++  +  ++ ++L          D L +D    I  +  W  +LYL +IN +  +D+    + ++EY   M
Sbjct:  353 PKAFVLTEYHAVLLYADHVRAICLLNQEQVYQEAFDEARVGKP---LSIERDELTGSIYVYTVKTVFNLRVTREERNVWRIYLDKGQYELATAHAAEDPEHLQLVLCQRADAAFADGSYQVAADYYAETD--KSFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELDEDKMNIIKALVIWLIDLYLIQIN-MPDKDEEWRSSWQTEYDEFM 563          
The following BLAST results are available for this feature:
BLAST of EY650155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VPS18_DANRE7.452e-2835.08Vacuolar protein sorting-associated protein 18 hom... [more]
VPS18_HUMAN5.904e-2532.24Vacuolar protein sorting-associated protein 18 hom... [more]
VPS18_MOUSE8.526e-2431.51Vacuolar protein sorting-associated protein 18 hom... [more]
PEP3_SCHPO2.034e-1728.50Vacuolar membrane protein pep3 OS=Schizosaccharomy... [more]
VPS18_DROME5.010e-1626.73Vacuolar protein sorting-associated protein 18 hom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650155 ID=EY650155; Name=EY650155; organism=Citrus sinensis; type=EST; length=967bp
CCCGCGTCCGGAAATTTTGTGGAAAACAAGCTCTTTTGAGCTATTCAAAA
TTGTCTGAAGGTGCTGAAGCAGTTAAACCCGGTTCCATGGCAGTGTCTGA
ATATCATTTCCTCCTGCTAATGGGAAATAAGGTTAAGGTTGTAAATAGAA
TCAGTGAGCAAATTATTGAGGAACTTCAGTTTGATCAAACATCAGACTCC
ATTTCAAGGGGTATCATTGGATTGTGCAGTGATGCAACTGCTGGGGTCTT
CTATGCATATGACCAGAATTCTATTTTCCAGGTGTCTGTCAATGATGAAG
GCCGAGATATGTGGAAGGTATATCTGGATATGAAAGAGTACGCTGCAGCT
TTAGCGAATTGTCGTGATCCACTCCAGAGAGACCAAGTATATTTAGTTCA
TGCTGAAGCTGCCTTTGCCACCAAGGATTTTCATAGAGCAGCTTCTTTCT
ATGCAAAAATTAACTATATTTTATCATTTGAGGAGATCACTTTGAAGTTT
ATTAGTGTAAGCGAGCAGGATGCTTTGAGAACCTTCCTACTGCGCAAGCT
TGATAATCTTGCAAAGGATGACAAATGCCAAATAACAATGATTTCCACAT
GGGCAACTGAATTGTACTTGGACAAGATAAATCGATTACTCTTGGAAGAT
GACACTGCTTTGGAGAATCGAAAGTCAGAGTACCAATCAATTATGAGAAG
AGTTCCGTGCTTTCCTGAGTGATTGAANGGATGTATTTGGATGGGGCAAA
CTACATGAAACTTTTANAAAGCTATNGTAGAGNTGAAGAACTGGTACTTT
TTTGCTAGTTTGAAGGACACCACGAAATCGTAGTTCATCATTAATTCCAG
CAGGAGAATCCAAAAAGCTTGCAAAATGCTCGAAAACTGCTGTCCCATAG
AATCTCAGTACAATTTGCACANATCTATCATGCTTGATCATTGAAACGGG
GGATNCATGGATGACCC
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