EY650153

Overview
NameEY650153
Unique NameEY650153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.364e-59
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPPCV 581
            LSDE+L KEI YL+R+ WIPCLEFELE G+VYREHH+ PG+Y GRYWTMWKLPM+GCTD+  V+ EVGE + EYP++F+R+IGFDN+R+ QCI  + A PP V
Sbjct:   78 LSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          

HSP 2 Score: 88.9669 bits (219), Expect = 1.364e-59
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS+ +AT NR +   AS+ APFTGLKS+ AFP     NND + + SN  R QCM VWPP GL K++TLSYLP
Sbjct:    5 SSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLP 76          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.596e-58
Identity = 62/100 (62.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            L++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H  PG+Y GRYWTMW+LP++G TD++ VL E+ + + EYP SF+RIIGFDN+R+ QCI  +A  P
Sbjct:   78 LTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          

HSP 2 Score: 97.8265 bits (242), Expect = 5.596e-58
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS  V T NRAS A A++VAPFTGLKSS+ FP    TNNDIT IASN  R  CM VWPP G  KF+TLSYLP
Sbjct:    5 SSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLP 76          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-57
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPP 575
            LS ESL K+I YL+  GWIPCLEFELE  +VYRE++  PG+Y GRYW MWKLPM+GCTDAT VL E+ E    YP S +RIIGFDN R+ QCI  +A  PP
Sbjct:   80 LSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          

HSP 2 Score: 102.449 bits (254), Expect = 3.582e-57
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS TVAT +RA+ A A+MVAPFTGLKS++AFPA   +NNDIT +ASN  R QCM VWPP GL KF+TLSYLP
Sbjct:    7 SSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLP 78          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.348e-56
Identity = 59/100 (59.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            +S+E L KE  YLLR+GW+PC+EF++  G+VYRE+H  PGFY GRYWTMWKLPM+GCTD++ V+ E+ E + EYP +F+R+IGFDN+R+ QCI  +A  P
Sbjct:   80 MSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          

HSP 2 Score: 95.1301 bits (235), Expect = 1.348e-56
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPN 271
            SS  VA+ N AS A ASMVAPFTGLKSS+ FP     N DIT +ASN  + QCM VWPP GL KF+TLSYLP+
Sbjct:    7 SSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPD 79          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.294e-56
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH+ PG+Y GRYWTMWKLPM+GCTDAT VL EV E +  YP ++VRIIGFDN+R+ QCI  +A  P
Sbjct:   78 LSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          

HSP 2 Score: 85.1149 bits (209), Expect = 2.294e-56
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   59 TTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPN 271
            ++ A A R+++A A+MVAPFTGLKS+++FP +   N DIT IASN  R QCM VWPP    K++TLSYLP+
Sbjct:    7 SSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPD 77          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.898e-56
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANPPCV 581
            LS E L KE+ YLLR   IPCLEFELE G+VYREH+  PG+Y GRYWTMWKLPM+GC D++ VL E+ E +  YP +F+RIIGFDN R+ Q I  +A  PP V
Sbjct:   80 LSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          

HSP 2 Score: 100.138 bits (248), Expect = 3.898e-56
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   53 SSTTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS TVA  +RAS A +SMVAPFT LKS+SAFP    TNNDIT IASN  R QCM VWPP GL KF+TLSYLP
Sbjct:    7 SSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 78          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.082e-56
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            LS ESL KE+ YLLR  W+PCLEFELE G+VYRE+H  PG+Y GRYWTMWKLPM+GCTD++ VL E+ E +  YP SF+RIIGFDN+R+ QCI  +A  P
Sbjct:   81 LSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          

HSP 2 Score: 88.1965 bits (217), Expect = 5.082e-56
Identity = 50/74 (67.57%), Postives = 54/74 (72.97%), Query Frame = 2
Query:   53 SSTTVAT--ANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS TVAT  A+R + A A MVAPF GLKSSSAFP    +N DIT IASN  R QCM VWPP GL KF+TLSYLP
Sbjct:    7 SSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 79          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.627e-56
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH++ PG+Y GRYWTMWKLPM+GCTD T VL EV E +N YP +++RIIGFDN+R+ QCI  +A  P
Sbjct:   79 LSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          

HSP 2 Score: 84.3445 bits (207), Expect = 6.627e-56
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   59 TTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNN-DITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPN 271
            ++ A A R+++A ASMVAPFTGLKS+++FP     NN DIT +ASN  R +CM VWPP  + K++TLSYLP+
Sbjct:    7 SSAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPD 78          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.468e-55
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            LS ESL KE+ YLLR  W+PCLEFELE G+VYRE+H  PG+Y GRYWTMWKLPM+GCTD++ VL E+ E +  YP SF+RIIGFDN+R+ QCI  +A  P
Sbjct:   81 LSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          

HSP 2 Score: 87.0409 bits (214), Expect = 1.468e-55
Identity = 50/74 (67.57%), Postives = 54/74 (72.97%), Query Frame = 2
Query:   53 SSTTVAT--ANRASLAHASMVAPFTGLKSSSAFPAANNTNNDITFIASNC*RGQCMNVWPPTGLNKFDTLSYLP 268
            SS TVAT  A+R + A A MVAPFTGLKSSSA P    +N DIT IASN  R QCM VWPP GL KF+TLSYLP
Sbjct:    7 SSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 79          
BLAST of EY650153 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.468e-55
Identity = 66/100 (66.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  273 LSDESLLKEISYLLRSGWIPCLEFELEKGWVYREHHN*PGFYYGRYWTMWKLPMYGCTDATHVLNEVGEVQNEYPHSFVRIIGFDNMREAQCIILLAANP 572
            LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H  PG+Y GRYWTMWKLPM+GCTDAT VL EV E +  YP +++RIIGFDN+R+ QCI  +A  P
Sbjct:   79 LSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          

HSP 2 Score: 84.3445 bits (207), Expect = 1.468e-55
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   59 TTVATANRASLAHASMVAPFTGLKSSSAFPAANNTNN-DITFIASNC*RGQCMNVWPPTGLNKFDTLSYLPN 271
            ++ A A R+++A ASMVAPFTGLKS+++FP     NN DIT +ASN  R +CM VWPP  + K++TLSYLP+
Sbjct:    7 SSAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPD 78          
The following BLAST results are available for this feature:
BLAST of EY650153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS_LACSA1.364e-5966.99Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA5.596e-5862.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR3.582e-5763.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA1.348e-5659.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL2.294e-5668.00Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_BETVE3.898e-5661.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY5.082e-5665.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS0_SOLTU6.627e-5666.00Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_MALSP1.468e-5565.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU1.468e-5566.00Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650153 ID=EY650153; Name=EY650153; organism=Citrus sinensis; type=EST; length=954bp
CCACGCGTCCGGCTACAATAATGATCATGTACCAATGGGGGGGTGGGGGG
GCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCACGCC
AGCATGGTCGCCCCCTTTACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGC
AGCCAATAATACCAACAATGACATTACTTTCATTGCAAGCAACTGCTGAA
GAGGCCAATGCATGAATGTGTGGCCACCAACTGGCTTGAATAAGTTCGAT
ACTCTCTCATACCTACCGAACACTGTCCGATGAATCTTTGCTCAAGGAAA
TCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGCTG
GAGAAAGGATGGGTGTACCGTGAGCACCACAACTGACCAGGATTCTACTA
TGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATG
CGACACATGTTTTGAATGAGGTTGGGGAGGTCCAGAACGAATACCCACAT
TCATTCGTTCGAATTATCGGATTTGACAACATGCGTGAAGCGCAGTGCAT
CATTTTGCTTGCTGCCAACCCACCATGCGTCTATGTTCCCATTGATATTG
GCGGAACCACCCATGCAATCTTGGTGACTATTATGATGTGTAACCCCCAT
ATGATCATTCGATCAATGGGGGTTATGGCTGCGTTGAATTTGACCTAGGC
GGCGGGCGCTGGTGCCTAAACTATTTGGTTACTCCCGAGTTTGCCTGTCC
GTTATATACATGGAATAAATAAAGGCCTTGTGGTGATTTATTAATCAGGG
CCTCCGATGTCCAATTAATGAGGTGCATTCTCGGAATAAAAAGGCTTCTA
TGTTTCTAAAAAAAAAGAGAGGGCGGGCGTCTCAAAGAATCCACTTAGTT
CCCGGCGTTGCAAGCTTACTCTGATATGTGGACCTAAATCAATAACGGCC
GGGG
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