EY650139

Overview
NameEY650139
Unique NameEY650139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_MOUSE (General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.760e-18
Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LN  F+ NL+  L+ GG A   +    G       +  L+ YA  +WE  L  ++ S  A    + +  +    Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +L F   G+ Y++  +S+   + ++   + G+
Sbjct:  111 LNPVFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 271          

HSP 2 Score: 27.7202 bits (60), Expect = 2.760e-18
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1
Query:  769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906
            L+ +GLV   +  K   + PT+LA NLS  ++ +  +  + GF+V ET
Sbjct:  266 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_PANTR (General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.590e-18
Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LN  F+ NL+  L+ GG A   +    G       +  L+ YA  +WE  L  ++ S  A    + +  +    Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +L F   G+ Y++  +S+   + ++   + G+
Sbjct:  110 LNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 270          

HSP 2 Score: 27.7202 bits (60), Expect = 3.590e-18
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1
Query:  769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906
            L+ +GLV   +  K   + PT+LA NLS  ++ +  +  + GF+V ET
Sbjct:  265 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 311          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_HUMAN (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.590e-18
Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LN  F+ NL+  L+ GG A   +    G       +  L+ YA  +WE  L  ++ S  A    + +  +    Q GL+   +  E P +T +GFQFLL+DT AQLWY + +Y+  +Q RG++  +++SFL +L F   G+ Y++  +S+   + ++   + G+
Sbjct:  110 LNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 270          

HSP 2 Score: 27.7202 bits (60), Expect = 3.590e-18
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1
Query:  769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906
            L+ +GLV   +  K   + PT+LA NLS  ++ +  +  + GF+V ET
Sbjct:  265 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 311          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_YARLI (RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica GN=TFB2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.237e-17
Identity = 48/163 (29.45%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            +N TF+ NL+  L+ G       +P     +    +  L+A+A+ QWE  L  ++ ++    P   S  ++ + +   L++ ++   R+T +GFQFLL D NAQ+W ++ +Y++ S+   ++  D+++F+  L     G+ Y+L+ LSE Q+ M++D  D GI
Sbjct:   95 INPTFKKNLRAALVGGDQNISFGVPCDTEDKHKVDVAFLDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGI 254          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_DEBHA (RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii GN=TFB2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.365e-15
Identity = 57/181 (31.49%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  297 RLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLG-IGQTSXGXER 812
            RL+ TF+ N +  L         G L   P    ++ +      L+++A+ +WE  L  ++ +  +  P+N   S++K    GL+   +K   RL  T SGFQFLL D NAQ+W ++ +Y++ +Q+  ++  D+++F+  L     G+ Y +++LSE Q SM+ D  D G I Q S   ER
Sbjct:   98 RLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF-----LDSFALQKWESILHFMVGTELSVTPSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLIYQRSENSER 271          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_SCHPO (RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe GN=tfb2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGGALPREPMP-SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LNS F+      L  GG      +P +     L T++ L+AYA   WE  L  ++ + +A+ P      ++ + +RG L+   K   R+T +GFQFLL D NAQ+W ++ +Y+  S++  ++   ++ FL  L     G AY+++ L++ Q+ M++D  + G+
Sbjct:   93 LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGL 252          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_KLULA (RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis GN=TFB2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 51/195 (26.15%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  207 KNLNLICTGCPMLNC*CSSYFNDRKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            K+LNLI  G             + K+    RLN  F+ +  K+++ GG +      +    T  + T   L+ Y+  +WE  L  ++ +     P      +++    GL+ + +    ++T  GFQFLL D NAQ+W ++ +Y+  ++   ++  D+++F+  L     G+AY  + LS  QR+M++D  D G+
Sbjct:   82 KSLNLIIEG-------------ESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTNPVSTAT-LDQYSAEKWETILHYMVGTPNTNTPGGKVLDLLQ--HSGLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGL 259          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_YEAST (RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae GN=TFB2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.280e-13
Identity = 44/164 (26.83%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAP--RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LN TF+ +L+  L  G    +      +   + +L+ L+ Y+  +WE  L  ++ +  A+ P   S  ++ + +   L++        ++T  GFQFLL + N+QLW ++ +Y+   +   ++  D++ F+  L     G+AY ++ LSE QR M++D  D G+
Sbjct:  100 LNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGL 258          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_ASHGO (RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii GN=TFB2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 36/131 (27.48%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  399 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            T+  L++YA  +WE  L  ++ +   + P     +++ + +   L++ D+ +  L  T  GFQFLL D NAQ+W ++ +Y++ ++   ++  D+++ +  +     G+AY++  LSE Q++M++D  D G+
Sbjct:  142 TMAMLDSYAADKWETILHFMVGTPLTKSP---GKNVLSLLRHSKLMEVDESSKELKITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDLRDYGL 269          
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_CANGA (RNA polymerase II transcription factor B subunit 2 OS=Candida glabrata GN=TFB2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  300 LNSTFQSNLQKHLINGGALPREPMPSGITA---RLPTLEDL---EAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQR--DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785
            LN TF+ +  ++ + GG +       GI     RL T+ +L   + YA  +WE  L  ++ +  A+ P   S +++ + +   L++   D     +T  GFQFLL + N+Q+W ++ +Y+  ++   ++   +++F+  L     G+AY+   LSE Q  M+ D  D G+
Sbjct:  100 LNPTFRESF-RNALTGGEVNNS---FGIVVDEDRLDTVVNLAVLDEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFLLQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLDMRDYGL 262          
The following BLAST results are available for this feature:
BLAST of EY650139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TF2H4_MOUSE2.760e-1830.49General transcription factor IIH subunit 4 OS=Mus ... [more]
TF2H4_PANTR3.590e-1830.49General transcription factor IIH subunit 4 OS=Pan ... [more]
TF2H4_HUMAN3.590e-1830.49General transcription factor IIH subunit 4 OS=Homo... [more]
TFB2_YARLI7.237e-1729.45RNA polymerase II transcription factor B subunit 2... [more]
TFB2_DEBHA1.365e-1531.49RNA polymerase II transcription factor B subunit 2... [more]
TFB2_SCHPO3.040e-1530.06RNA polymerase II transcription factor B subunit 2... [more]
TFB2_KLULA2.179e-1326.15RNA polymerase II transcription factor B subunit 2... [more]
TFB2_YEAST8.280e-1326.83RNA polymerase II transcription factor B subunit 2... [more]
TFB2_ASHGO4.109e-1227.48RNA polymerase II transcription factor B subunit 2... [more]
TFB2_CANGA4.543e-1127.06RNA polymerase II transcription factor B subunit 2... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-F11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650139 ID=EY650139; Name=EY650139; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGGTTAGGAATTGGGTTATATTTGTTGACCATTTCTCGCAT
CGGTTGTGTGTACTGCCGGTTAATATGCTGTCATGGCAAGTTATTTTAAA
AAGTATTAAGTTTTGCAGCTTTATCTGTTTATATTTAGATGTATCTCTAT
ATGCTTGAATGTTGTCTTCCAATTAATATCACTAGTATTCTTTTTTTTTT
TAAAAAAAGAATTTGAATTTAATCTGTACTGGTTGCCCTATGCTGAATTG
CTGATGTTCTTCATATTTTAATGACAGGAAGAAGGAAACCACTTATAGAT
TAAATTCAACATTCCAGTCTAATCTCCAGAAGCATTTAATAAATGGTGGA
GCTTTGCCAAGGGAACCAATGCCTTCTGGTATTACTGCAAGGCTTCCAAC
CTTGGAGGACCTTGAGGCCTATGCCATTGGACAATGGGAGTGTTTCTTGC
TGCAACTTATTAGTTCAGCCCAAGCTGAAAGGCCGACAAATTTCAGCTCT
TCCATGATGAAGGTTTTCCAGCGTGGTCTTTTGATTCAAAGGGATAAAGA
AGCCCCAAGGTTAACAGAGAGTGGTTTTCAATTTTTGCTGATGGATACTA
ATGCACAGCTCTGGTACATCGTTAGAGAATATATCTCCAATTCCCAGGAA
CGAGGCATAAATCAAGCAGATCTGATTTCTTTTCTTCTGGAGCTTANTTT
CCATGTCGCTGGGGAGGCATATAATTTAAATACACTGAGTGAAATACAAA
GAAGTATGATCAAAGACTTTGCAGACTTGGGGATTGGTCAAACTTCANCA
GGGCANGAAAGAAAGTNGGTTTATACCTACTAAATTAGCTACCAATCTTT
CCATGAGCTTAACTGATTCATCANCACGAAAGAAGGGGTTCGTTGTANTG
GAAACAACTCCANGATGATGCTTATC
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