EY650139
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_MOUSE (General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.760e-18 Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LN F+ NL+ L+ GG A + G + L+ YA +WE L ++ S A + + + Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L F G+ Y++ +S+ + ++ + G+ Sbjct: 111 LNPVFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 271 HSP 2 Score: 27.7202 bits (60), Expect = 2.760e-18 Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1 Query: 769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906 L+ +GLV + K + PT+LA NLS ++ + + + GF+V ET Sbjct: 266 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_PANTR (General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.590e-18 Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LN F+ NL+ L+ GG A + G + L+ YA +WE L ++ S A + + + Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L F G+ Y++ +S+ + ++ + G+ Sbjct: 110 LNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 270 HSP 2 Score: 27.7202 bits (60), Expect = 3.590e-18 Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1 Query: 769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906 L+ +GLV + K + PT+LA NLS ++ + + + GF+V ET Sbjct: 265 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 311
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TF2H4_HUMAN (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.590e-18 Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LN F+ NL+ L+ GG A + G + L+ YA +WE L ++ S A + + + Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +L F G+ Y++ +S+ + ++ + G+ Sbjct: 110 LNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGL 270 HSP 2 Score: 27.7202 bits (60), Expect = 3.590e-18 Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1 Query: 769 LQTWGLVKLXQGXKESXFIPTKLATNLSMSLTDS--SXRKKGFVVXET 906 L+ +GLV + K + PT+LA NLS ++ + + + GF+V ET Sbjct: 265 LREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 311
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_YARLI (RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica GN=TFB2 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.237e-17 Identity = 48/163 (29.45%), Postives = 91/163 (55.83%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 +N TF+ NL+ L+ G +P + + L+A+A+ QWE L ++ ++ P S ++ + + L++ ++ R+T +GFQFLL D NAQ+W ++ +Y++ S+ ++ D+++F+ L G+ Y+L+ LSE Q+ M++D D GI Sbjct: 95 INPTFKKNLRAALVGGDQNISFGVPCDTEDKHKVDVAFLDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLRDYGI 254
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_DEBHA (RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces hansenii GN=TFB2 PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.365e-15 Identity = 57/181 (31.49%), Postives = 96/181 (53.04%), Query Frame = 3 Query: 297 RLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLG-IGQTSXGXER 812 RL+ TF+ N + L G L P ++ + L+++A+ +WE L ++ + + P+N S++K GL+ +K RL T SGFQFLL D NAQ+W ++ +Y++ +Q+ ++ D+++F+ L G+ Y +++LSE Q SM+ D D G I Q S ER Sbjct: 98 RLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF-----LDSFALQKWESILHFMVGTELSVTPSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLADLRDYGLIYQRSENSER 271
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_SCHPO (RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe GN=tfb2 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15 Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGGALPREPMP-SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LNS F+ L GG +P + L T++ L+AYA WE L ++ + +A+ P ++ + +RG L+ K R+T +GFQFLL D NAQ+W ++ +Y+ S++ ++ ++ FL L G AY+++ L++ Q+ M++D + G+ Sbjct: 93 LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGL 252
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_KLULA (RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis GN=TFB2 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13 Identity = 51/195 (26.15%), Postives = 95/195 (48.72%), Query Frame = 3 Query: 207 KNLNLICTGCPMLNC*CSSYFNDRKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 K+LNLI G + K+ RLN F+ + K+++ GG + + T + T L+ Y+ +WE L ++ + P +++ GL+ + + ++T GFQFLL D NAQ+W ++ +Y+ ++ ++ D+++F+ L G+AY + LS QR+M++D D G+ Sbjct: 82 KSLNLIIEG-------------ESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTNPVSTAT-LDQYSAEKWETILHYMVGTPNTNTPGGKVLDLLQ--HSGLMEEAEYGELKITNQGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGL 259
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_YEAST (RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae GN=TFB2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.280e-13 Identity = 44/164 (26.83%), Postives = 85/164 (51.83%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAP--RLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LN TF+ +L+ L G + + + +L+ L+ Y+ +WE L ++ + A+ P S ++ + + L++ ++T GFQFLL + N+QLW ++ +Y+ + ++ D++ F+ L G+AY ++ LSE QR M++D D G+ Sbjct: 100 LNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGL 258
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_ASHGO (RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii GN=TFB2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12 Identity = 36/131 (27.48%), Postives = 76/131 (58.02%), Query Frame = 3 Query: 399 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 T+ L++YA +WE L ++ + + P +++ + + L++ D+ + L T GFQFLL D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ LSE Q++M++D D G+ Sbjct: 142 TMAMLDSYAADKWETILHFMVGTPLTKSP---GKNVLSLLRHSKLMEVDESSKELKITNEGFQFLLQDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDLRDYGL 269
BLAST of EY650139 vs. ExPASy Swiss-Prot
Match: TFB2_CANGA (RNA polymerase II transcription factor B subunit 2 OS=Candida glabrata GN=TFB2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11 Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = 3 Query: 300 LNSTFQSNLQKHLINGGALPREPMPSGITA---RLPTLEDL---EAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQR--DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELXFHVAGEAYNLNTLSEIQRSMIKDFADLGI 785 LN TF+ + ++ + GG + GI RL T+ +L + YA +WE L ++ + A+ P S +++ + + L++ D +T GFQFLL + N+Q+W ++ +Y+ ++ ++ +++F+ L G+AY+ LSE Q M+ D D G+ Sbjct: 100 LNPTFRESF-RNALTGGEVNNS---FGIVVDEDRLDTVVNLAVLDEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFLLQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLDMRDYGL 262 The following BLAST results are available for this feature:
BLAST of EY650139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY650139 ID=EY650139; Name=EY650139; organism=Citrus sinensis; type=EST; length=926bpback to top |