EY650135

Overview
NameEY650135
Unique NameEY650135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6958 contig Csv1_Contig6958:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650135 vs. ExPASy Swiss-Prot
Match: SF3B1_HUMAN (Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3)

HSP 1 Score: 315.464 bits (807), Expect = 2.403e-85
Identity = 151/187 (80.75%), Postives = 168/187 (89.84%), Query Frame = 1
Query:    7 VRIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPEL 567
            V IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA++ V+HM+LGV G GCED+L HLLNYVWPN+FETSPHVI AVM A+EG+RVA+G   +L YCLQGLFHPARKVR+VYWKIYNS+YIG+QDAL+A YP + ++  N Y R EL
Sbjct: 1114 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYEL 1300          
BLAST of EY650135 vs. ExPASy Swiss-Prot
Match: SF3B1_XENLA (Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.139e-85
Identity = 150/187 (80.21%), Postives = 169/187 (90.37%), Query Frame = 1
Query:    7 VRIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPEL 567
            V IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA++ V+HM+LGV G GCED+L HLLNYVWPN+FETSPHVI AVM A+EG+RVA+G   ++ YCLQGLFHPARKVR+VYWKIYNS+YIG+QDAL+A YP + +++ N Y R EL
Sbjct: 1117 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYEL 1303          
BLAST of EY650135 vs. ExPASy Swiss-Prot
Match: SF3B1_MOUSE (Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.354e-85
Identity = 150/187 (80.21%), Postives = 168/187 (89.84%), Query Frame = 1
Query:    7 VRIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPEL 567
            V IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA++ V+HM+LGV G GCED+L HLLNYVWPN+FETSPHVI AVM A+EG+RVA+G   +L YCLQGLFHPARKVR+VYWKIYNS+YIG+QDAL+A YP + ++  N Y R +L
Sbjct: 1114 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDL 1300          
BLAST of EY650135 vs. ExPASy Swiss-Prot
Match: SF3B1_SCHPO (U2 snRNP component prp10 OS=Schizosaccharomyces pombe GN=prp10 PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 3.486e-68
Identity = 120/187 (64.17%), Postives = 146/187 (78.07%), Query Frame = 1
Query:    7 VRIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPEL 567
            V IAIVAETC PFTV+PALM +YR PE+NVQNGVLKSL+F+FEYIGE  +DY+YA+TPLL DALMDRD VHRQTAAS +KH++LG  GLG EDA++HLLN +WPNI E SPHVINAV E I+G+R  +G   ++ Y +QGLFHP+RKVR  YW  YNS Y+ + DA+V  YP + D+Q N Y    L
Sbjct:  998 VAIAIVAETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYIGEQARDYVYAITPLLADALMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNCIGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNYDMKTL 1184          
BLAST of EY650135 vs. ExPASy Swiss-Prot
Match: SF3B1_YEAST (U2 snRNP component HSH155 OS=Saccharomyces cerevisiae GN=HSH155 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.958e-59
Identity = 103/189 (54.50%), Postives = 136/189 (71.96%), Query Frame = 1
Query:    7 VRIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLADEQSNVYSRPELMM 573
            V I IVA+ C P+ VLP +MNEY  PE NVQNGVLK++SF+FEYIG M KDYIY +TPLLEDAL DRDLVHRQTA++ + H+AL  +G G EDA +HL+N + PNIFETSPH I  ++E +E +  ALG  + +NY   GLFHPA+ VR+ +W++YN++Y+  QDA+V  YP   D         +L++
Sbjct:  783 VAIGIVAKVCGPYNVLPVIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASNVITHLALNCSGTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYIWAGLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYPVTPDNNEEYIEELDLVL 971          
The following BLAST results are available for this feature:
BLAST of EY650135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3B1_HUMAN2.403e-8580.75Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF... [more]
SF3B1_XENLA3.139e-8580.21Splicing factor 3B subunit 1 OS=Xenopus laevis GN=... [more]
SF3B1_MOUSE5.354e-8580.21Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf... [more]
SF3B1_SCHPO3.486e-6864.17U2 snRNP component prp10 OS=Schizosaccharomyces po... [more]
SF3B1_YEAST2.958e-5954.50U2 snRNP component HSH155 OS=Saccharomyces cerevis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-F05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650135 ID=EY650135; Name=EY650135; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGAATTGCAATTGTTGCTGAAACATGTTCACCTTTCACCGT
TTTGCCAGCCCTAATGAACGAGTACCGTGTGCCAGAGCTTAATGTGCAGA
ATGGTGTTTTGAAGTCTCTCTCCTTCCTTTTCGAGTATATAGGTGAAATG
GGCAAAGACTATATCTATGCAGTGACTCCATTGCTTGAAGATGCCCTGAT
GGATAGAGATTTGGTTCATAGGCAGACTGCAGCTTCTGCAGTTAAGCACA
TGGCTTTGGGAGTTGCTGGTTTGGGTTGTGAGGATGCTCTCGTTCACTTG
CTGAACTATGTATGGCCTAACATTTTTGAGACTTCCCCTCACGTAATAAA
TGCAGTCATGGAAGCTATTGAAGGGATGAGGGTTGCCCTGGGTGCTGCTG
TTGTGCTAAACTACTGCCTACAGGGGCTTTTCCATCCTGCAAGGAAGGTT
AGAGAAGTGTACTGGAAGATTTACAACTCACTGTATATTGGTGCACAAGA
CGCACTTGTGGCGGCTTATCCTACCCTGGCTGATGAGCAGAGTAACGTAT
ATAGCAGGCCCGAGTTAATGATGTTTGTCTGAAGGGCAATGTGTCTTATG
GATTTTTAAGAGCTCATATGTTGGCTTATTTGTAGTTTGTTTAGTTTCCA
TATCTTACTTTCTAGTCTGAACAGCTGCATTCTTCGATTCCATAATAGCA
TGTTAGATCGTATCANATGAAAGCATGGAGTGATGNTATTTCAAATGCCG
TCAAAAGGGCACTGAGATCAAAGACATCAGTCTTGATTTCAANTAGTTNG
CTTTTGATGCANTTTTACTTAAATCAAAAAAAAAAAAAAA
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