EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.905e-36
Identity = 98/194 (50.52%), Postives = 126/194 (64.95%), Query Frame = 3
Query:  342 MALSAFSFPTYV----SKATDSGPHKSSPVTSHFFGAALFSHL-SHKLDNHQIQLKKRPNGVCASLSERGEYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQ--HMASLITKGLKWIDXFGPGQS 896
            MA SAF+FP+Y+      +TDS   KS+ ++S     +L + L S  L  +      R   VCASL+E+GEY+S RPPTPLLDTINYPIHM+NLS++ELKQL+DELRSDVIFNVSKTGGHLGS+LGV+ELTVA   + +  +D+I  DV H +   K     +G M TM Q   ++    +G    D FG G S
Sbjct:    1 MASSAFAFPSYIITKGGLSTDSC--KSTSLSS---SRSLVTDLPSPCLKPNNNSHSNRRAKVCASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGTGHS 189          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.699e-36
Identity = 89/191 (46.60%), Postives = 118/191 (61.78%), Query Frame = 3
Query:  342 MALSAFSFPTYVSK--ATDSGPHKSSPVTSHFFGAALFSHLSHKLDNHQIQLKKRPNGVCASLSERGEYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT---TLIKSDWEKGXMRTMMQHMASLITKGLKWIDXFGPGQS 896
            MAL A++FP  +++  A  S   K +P+ S +      + L  +      Q+KKR   V ASLSE GEY+++RPPTP++DTINYPIHM+NLS++ELKQLADELRSD IFNVSKTGGHLGS+LGV+ELTVA   + +  +DRI  DV H +    ++    EK         +A    +     D FG G S
Sbjct:    1 MALCAYAFPGILNRTVAVASDASKPTPLFSEWIHG---TDLQFQFHQKLTQVKKRSRTVQASLSESGEYYTQRPPTPIVDTINYPIHMKNLSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRREKMSTLRQTNGLAGFTKRSESEYDCFGTGHS 188          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.896e-31
Identity = 91/193 (47.15%), Postives = 119/193 (61.66%), Query Frame = 3
Query:  342 MALSAFSFPTYVSKATDSGPHKSSPVTSHFFGAALFSHLSHKLDNHQIQLKKRPNG-VCASLS---ERGEYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQ--HMASLITKGLKWIDXFGPGQS 896
            MAL+ FS    +S+    G   + P   HF  AA    L HKL +   + ++R +  + ASLS   E  EYHS+RPPTPLLDT+NYPIHM+NLS++EL+QLADELRSDVIF+VSKTGGHLGS+LGV+ELTVA   + +  +D+I  DV H +   K     +  M TM Q   ++    +     D FG G S
Sbjct:    1 MALTTFS----ISRGGFVG---ALPQEGHFAPAAAELSL-HKLQSRPHKARRRSSSSISASLSTEREAAEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFGTGHS 185          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.463e-14
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            S RP TPLLDT++YP  +R L   +L+QL+DELR+++I  V  TGGHLGS LGV+ELT A   + +  +DR+  DV H
Sbjct:    2 SARPDTPLLDTVSYPEDLRKLEPGQLRQLSDELRAEMISAVGVTGGHLGSGLGVVELTAAIHYVFNTPEDRLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P LD + +P  MRNLS+ +LKQLADELRS+ +  VS TGGHLG++LGV+ELTVA   + +   DRI  DV H
Sbjct:   15 PELDRVRFPADMRNLSVDQLKQLADELRSETVDAVSTTGGHLGASLGVVELTVALHAVFNTPDDRIIWDVGH 86          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_CELJU (1-deoxy-D-xylulose-5-phosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            E  + RP TPLLD+I+ P  +R LS ++L QLADELR+ +++ V +TGGH G+ LGV+ELT+A   +    +DR+  DV H T
Sbjct:    4 EIPTNRPATPLLDSIDSPAELRALSEKQLPQLADELRAFLLYTVGQTGGHFGAGLGVVELTIALHYVYDTPEDRLVWDVGHQT 86          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TP+LD +NYP  +R +S  +L Q ADELR++VI  VS+TGGHLGS+LGV+EL+VA   + +   D++  DV H
Sbjct:    3 RPHTPILDQVNYPSDLRRMSNADLAQCADELRAEVISAVSETGGHLGSSLGVVELSVAIHAVFNTPYDKLVWDVGH 78          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.487e-14
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RPPTPLLDT++ P  +R L   +L+QLADELR+++I  VS TGGHLG+ LGV+ELTVA   +    +D +  DV H
Sbjct:    4 RPPTPLLDTVSTPEDLRRLKPADLRQLADELRAEMISAVSVTGGHLGAGLGVVELTVALHYVFDTPRDVLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            S+ P TPLLDT+  P  +R L+  +L+QLADELR ++I  V +TGGHLGS LGV+ELTVA   + +  +DR+  DV H
Sbjct:    2 SQEPATPLLDTVKTPDDLRKLAPTQLRQLADELRVEMISAVGQTGGHLGSGLGVVELTVAIHYVFNTPEDRLVWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.359e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            S RP TPLLD +  P  ++ LS  +LK+LADELR+++I+ VSKTGGH G+ LGV+ELTVA   +    +D++  DV H
Sbjct:    2 SDRPSTPLLDNVQSPNDLKGLSDFDLKRLADELRAEMIWTVSKTGGHFGAGLGVVELTVALHSVFDTPRDKLVWDVSH 79          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_ARATH3.905e-3650.52Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN8.699e-3646.60Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ2.896e-3147.15Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ERYLH2.463e-1452.561-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_GLUOX3.217e-1456.941-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_CELJU3.217e-1448.191-deoxy-D-xylulose-5-phosphate synthase OS=Cellvib... [more]
DXS2_JANSC3.217e-1452.631-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_SPHWW5.487e-1453.951-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_NOVAD7.166e-1452.561-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS1_JANSC9.359e-1451.281-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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