EY650088

Overview
NameEY650088
Unique NameEY650088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:33..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.087e-61
Identity = 119/171 (69.59%), Postives = 134/171 (78.36%), Query Frame = 1
Query:   22 MSSEKKRGGGSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            MS+ +K    SSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSK IEYC +HVEA    +                 S+++DLKTWD++F+K DQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEE RRENQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.137e-59
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   28 SEKKRGGGSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGSGDKKDDK---STEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            S KK    SSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+K IEYC +HVEA +   +  +   +++DDLK WDADF+K DQ TLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEE RRENQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.866e-54
Identity = 105/152 (69.08%), Postives = 124/152 (81.58%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+K IEYC KHVEA +   GDK    S E D+LK WD++FVK DQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE E R EN+WAFE
Sbjct:   12 SSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.659e-53
Identity = 104/152 (68.42%), Postives = 122/152 (80.26%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGS---GDKKDDKSTED-DLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+K IEYC KHVEA +   GDK    STE+ +LKTWD DFVK D  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE E R EN+WAFE
Sbjct:   12 SSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.619e-49
Identity = 98/148 (66.22%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGSGDKKDDKSTEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL K IEYC KH        + +  +E+DL  WD  F+  +Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE  R+ENQWAFE
Sbjct:   10 SSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHV-----DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.781e-48
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGK-HVEAGSGDKKDDKSTEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL K IEYC K HV+  +        +E+DL  WD  F+  +Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE  R+ENQWAFE
Sbjct:   10 SSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.216e-46
Identity = 93/150 (62.00%), Postives = 116/150 (77.33%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGSGDKKDDKSTEDDLKTWDADFVKG--DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSK IEYC KHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE R+ENQWAFE
Sbjct:    9 SSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.147e-43
Identity = 91/149 (61.07%), Postives = 112/149 (75.17%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKGIEYCGKHVEAGSGDKKDDKSTEDDLKTWDADFVKG-DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQWAFE 495
            SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS  +EYC KHV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE   R+EN WAFE
Sbjct:   10 SSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 90/148 (60.81%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKGIEYCGKHVEAGS--GDKKDDKSTEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQW 486
            SSD + FE+E+ +A  S TIK+M+ED   +D+ IPLPNVTSTIL K ++YC  H +  S  GD K D+   DD+  +D DF K DQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE+ R+EN+W
Sbjct:    8 SSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of EY650088 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.663e-43
Identity = 90/148 (60.81%), Postives = 114/148 (77.03%), Query Frame = 1
Query:   52 SSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKGIEYCGKHVEAGS--GDKKDDKSTEDDLKTWDADFVKGDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEGRRENQW 486
            SSD + FE+E+ +A  S TIK+M+ED   +D  IPLPNVTSTIL K ++YC  H +  S  GD K D+   DD+  +D DF K DQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE+ R+EN+W
Sbjct:    8 SSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
The following BLAST results are available for this feature:
BLAST of EY650088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SKP1B_ARATH5.087e-6169.59SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH2.137e-5973.58SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH7.866e-5469.08SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH6.659e-5368.42SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH7.619e-4966.22SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH3.781e-4865.77SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.216e-4662.00SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH2.147e-4361.07SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI2.804e-4360.81SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI3.663e-4360.81SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-A12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650088 ID=EY650088; Name=EY650088; organism=Citrus sinensis; type=EST; length=692bp
CCACGCGTCCGCTCAGAAACGATGTCGTCTGAGAAGAAGAGGGGGGGGGG
GAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAGACGGTGGCCCTCGAGT
CGCAGACAATCAAGCACATGGTGGAGGACGACTGCGCCGACACCGTAATC
CCGCTGCCGAATGTGACGAGCACGATTCTCTCGAAGGGTATCGAGTACTG
CGGGAAGCACGTTGAGGCTGGGTCAGGGGACAAGAAGGACGACAAGTCGA
CCGAGGATGATCTCAAGACCTGGGATGCAGACTTCGTCAAGGGTGATCAG
AATACCCTCTTTGACCTAATCTTGGCCGCCAATTACCTGAACATTAAGGG
TTTGCTGGACTTGACCTGCCAAACTGTTGCAGACATGATCAAGGGGAAGA
CTCCAGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTCTCTCCC
GATGAAGAAGAGGAGGGTCGGAGAGAGAACCAATGGGCATTCGAGTGAAG
GACTGAAGTGATGAAGGCTCGGTAATTAATATTTGTGATAGGAATGTCGT
TATAATGATAGTGGTCTTTTAGTATGTTGCCAGTAGGTGTCTAGTATTGA
ACATCAACATTTCCTTTTGTCGTGAACCTGTGAATGCTGCTCGATATAAA
TGTCATTGAACCCTTGTCTATTGCATTAAAAAAAAAAAAAAA
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