EY650082

Overview
NameEY650082
Unique NameEY650082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650082 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.314e-19
Identity = 58/108 (53.70%), Postives = 65/108 (60.19%), Query Frame = 2
Query:   77 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLL 382
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK KQLP NFKKLLL
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLL 107          
BLAST of EY650082 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.091e-17
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   77 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLL 382
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK K LP NFKKLLL
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLL 101          
BLAST of EY650082 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   98 VDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXX-YEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLL 382
            ++  T       +  VE KP++K  K K  KE                     YEEMIKDAIVTLKE+TGSSQYAI KFIEEK K+LPP F+KLLL
Sbjct:   12 IEGNTAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLL 107          
BLAST of EY650082 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-14
Identity = 47/83 (56.63%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  146 EDKPSSKAGKGK---TSKEXXXXXXXXXXXXXXXXXXXX-YEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLL 382
            E KP++K GK K   T+K                      YEEMIKDAIVTLKE+TGSSQYAI KFIEEKHK LPP F+KLLL
Sbjct:   25 EKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLL 107          
BLAST of EY650082 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.755e-12
Identity = 40/80 (50.00%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  146 EDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLF 385
            + K  +KA   K  KE                    + EMI DAI TLKE+TGSSQYAI KF+E+KHKQLP NF+KLLLF
Sbjct:   18 KSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLF 97          
The following BLAST results are available for this feature:
BLAST of EY650082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H1_PEA4.314e-1953.70Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC3.091e-1750.00Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H11_ARATH6.446e-1548.96Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_ARATH1.436e-1456.63Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H1_EUPES1.755e-1250.00Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-A03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650082 ID=EY650082; Name=EY650082; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGATCTTTCGTTATCTTTCTTGCTCGCTCGGGAGCTGGCTA
ATTTCTGAAACCCAATTCGATTCAAAATGGCCACTGAAGATCCCGTTGTG
GACACGGAGACCCTTCCTCAACCGGAATCCGCTGAACCGGTGGTAGAGGA
CAAACCGTCCTCCAAAGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAG
CCAAGAAAGCCGCTGCTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCT
CCGTATGAAGAGATGATTAAGGATGCAATTGTTACTTTGAAAGAGAAGAC
CGGTTCGAGTCAGTATGCAATTGCCAAATTTATTGAGGAGAAGCACAAGC
AGTTGCCACCCAACTTTAAGAAGCTGTTGCTGTTCATTTGAAGAAGCTTG
TGGGTTCCGGAAAGCTCGTGAAGGTTAATGGTTCCTTCAAGCTTCCATCG
GCTANGGCTGCCGTTTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGC
TAAAAAGAAGAAGCCGGTTGCTGCTGGGTATGCCAAAACTAATGCGGCGC
CCTCCAATGCCAAAGCTCCACCTATGGCTAAGGCTAAGGCACCAGCTAAA
GCGTCGGGCAATGCTAAGCCAGCTGCTATACCCAAGCCAAGCCNGCTGCC
AGACTAAGGCGGTGGCTGGCAGACTAAAGCGGCTCCGGCTAATGCTATGC
CTGCTGCCAAACCGAAAGCTGCATCACCCAGACGAAGGTGACCGNCCAGC
CGAATCCAATGATGATCCCGCCGATGGTGCGAAGACGTNCACCAGACATC
TNCAGGGAAATAGCGGCTGCTCCCATGCCGCTCCAANAAGGCTCGGCTGN
CATGAAGCTCGGCTATAGCGTGAGCTAATAGCGTCAGTACCC
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