EY650077

Overview
NameEY650077
Unique NameEY650077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650077_ssr196 microsatellite EY650077_ssr196:196..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10009 contig Csv1_Contig10009:389..1281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 2.080e-98
Identity = 183/220 (83.18%), Postives = 195/220 (88.64%), Query Frame = 1
Query:  130 PTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            PT SHLGF N ++QL  F+  +          R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN+FDLMYEQVKA+K+G +VEKPIYNHVTGLLD PELIKPPKILVIEGLHPM+D+RVR+LLDF IYLDISNEVKFAWKI RDM ERGHSLESIKASIEAR
Sbjct:    9 PTTSHLGF-NQKKQL--FFCNKSAYKRVSFSSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEAR 224          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 7.656e-93
Identity = 175/228 (76.75%), Postives = 192/228 (84.21%), Query Frame = 1
Query:  115 CSLYS-PTKSHLGFFNNQRQLAVFYN--KRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            C++Y+ PT +HLG   NQ    VF+N  +           R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDD+HSLDR GRK + VTALDP+AN+FDLMYEQVKA+K+G +V+KPIYNHV+GLLDPPELI+PPKILVIEGLHPMYDARVRELLDF IYLDISNEVKFAWKI RDM ERGHSLESIKASIE+R
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMKERGHSLESIKASIESR 229          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 4.201e-91
Identity = 173/230 (75.22%), Postives = 187/230 (81.30%), Query Frame = 1
Query:  100 SLNSPCSLYSPTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            SL SPC+    T  + GF  NQ    +F+  R               ++C+    Q IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP+AN+FDLMYEQVKA+K+G ++EKPIYNHVTGLLDP ELI+PPKI VIEGLHPMYD RVRELLDF IYLDISNEVKFAWKI RDM ERGHSLESIKASIEAR
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNTRHGARTFQVSCAV--EQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPKIFVIEGLHPMYDERVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEAR 231          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 8.760e-89
Identity = 161/184 (87.50%), Postives = 174/184 (94.57%), Query Frame = 1
Query:  238 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGAA+PPKGGNPDSNTLISDTTTVICLDDYHSLDR GRKE+ VTALDPRAN+FDLMYEQVKA+K+G++VEKPIYNHVTGLLDPPELI+PPKILVIEGLHPM+D RVR+LLDF IYLDISNEVKFAWKI RDM ERGHSLESIKASIEAR
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPKILVIEGLHPMFDERVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEAR 223          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.238e-76
Identity = 138/179 (77.09%), Postives = 153/179 (85.47%), Query Frame = 1
Query:  253 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLISD TTVICLDDYH LDR GRK KGVTAL P A NFDLMY QVKA+K+G SV+KPIYNHV+GL+D PE I+ P ILVIEGLHP YD RV ELLDF IYLDIS+++KFAWKI RDM ERGHSLESIK+SI AR
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPILVIEGLHPFYDKRVAELLDFKIYLDISDDIKFAWKIQRDMAERGHSLESIKSSIAAR 209          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.009e-60
Identity = 113/175 (64.57%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  265 QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESIKASIEAR 789
            + ++IG+A DSGCGKSTF+RRLT +FG                  +  TVICLDDYHSLDR GRK  GVTALDPRANNFDLMYEQ+K +K G S+ KPIYNH TGLLDPPE ++P K++VIEGLHP+YD RVREL+DF +YLDIS EVK  WKI RDM ERGH+ E I ASI AR
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVEPNKVVVIEGLHPLYDERVRELVDFGVYLDISEEVKINWKIQRDMAERGHTYEDILASINAR 164          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.377e-25
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 1
Query:  328 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVK 525
            LTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDR      GVTALDPRAN+FDLMYEQVK
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDLMYEQVK 60          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: URK_BREBN (Uridine kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=udk PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = 1
Query:  271 IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHS-LDRTGRKEKGVTALD-PRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPEL-IKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESI 768
            ++IG+A  SG GK+T  + L   F                  +D+ T+I  D Y+        +E+ +T  D P A + DL+   ++ +  G +++KPIY+       P ++ + P  ++++EG+  + D R+R L+D  +Y+D   +V+ A +I RD+ ERG SL+S+
Sbjct:    5 VLIGVAGGSGSGKTTVAKELYRQFQ-----------------NDSVTMIEQDSYYKDQSHLSPEERALTNYDHPFAFDNDLLLAHLQELMQGKAIQKPIYDFKVHNRKPEQIQVDPKDVIILEGMLILEDERIRNLMDIKVYVDTDADVRIARRIVRDIEERGRSLDSV 156          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: URK_BORRA (Uridine kinase OS=Borrelia recurrentis (strain A1) GN=udk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  274 VIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLL-DPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESI 768
            +IG++  SG GK+T + +++ V                 LIS       + DY        +   V    P A + +L Y+Q+K +K+  S+  P+Y+ +     D    I P  I+++EG+    + RVR L+D  IY+D  N+++F  ++ RDM++RG +LES+
Sbjct:    4 IIGISGGSGSGKTTIVNKISEVIS------------EFVLISQDNYYKSVGDYEY------EFLDVNFDHPDAFDNNLFYKQLKKLKENQSINMPLYDFINHKRRDETIKIVPTPIIIVEGIMIFVEERVRNLIDLKIYIDTPNDIRFIRRLERDMSKRGRTLESV 151          
BLAST of EY650077 vs. ExPASy Swiss-Prot
Match: URK_BORDL (Uridine kinase OS=Borrelia duttonii (strain Ly) GN=udk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  274 VIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLL-DPPELIKPPKILVIEGLHPMYDARVRELLDFXIYLDISNEVKFAWKIXRDMTERGHSLESI 768
            +IG++  SG GK+T + +++ V                 LIS       + DY        +   V    P A + +L Y+Q+K +K+  S+  P+Y+ +     D    I P  I+++EG+    + RVR L+D  IY+D  N+++F  ++ RDM++RG +LES+
Sbjct:    4 IIGISGGSGSGKTTIVNKISEVIS------------EFVLISQDNYYKSVGDYEY------EFLDVNFDHPDAFDNNLFYKQLKKLKENQSINMPLYDFINHKRRDETIKIVPTPIIIVEGIMIFVEERVRNLIDLKIYIDTPNDIRFIRRLERDMSKRGRTLESV 151          
The following BLAST results are available for this feature:
BLAST of EY650077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
KPPR_MESCR2.080e-9883.18Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL7.656e-9376.75Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_WHEAT4.201e-9175.22Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH8.760e-8987.50Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE2.238e-7677.09Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY35.009e-6064.57Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
KPPR_VITSX1.377e-2587.88Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
URK_BREBN2.436e-1428.99Uridine kinase OS=Brevibacillus brevis (strain 47 ... [more]
URK_BORRA1.579e-1328.92Uridine kinase OS=Borrelia recurrentis (strain A1)... [more]
URK_BORDL1.579e-1328.92Uridine kinase OS=Borrelia duttonii (strain Ly) GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-H10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650077 ID=EY650077; Name=EY650077; organism=Citrus sinensis; type=EST; length=888bp
TCAGAATTTAGCTGAAAGAATCCTAAAACGTGCATTTCTGCTCTAGCAGC
AGCATCCCTCACCGAGCCAAAAAAAAAAAAAAGAAAGAAAATGGCCATTT
CCCTCAACTCACCATGCTCTCTTTACTCGCCAACAAAATCCCACTTGGGT
TTTTTCAACAACCAAAGACAACTAGCGGTTTTTTACAACAAGAGAAGCAG
CAGCAGCAGCATCAGCAGCAAGCAGAGAGGATGTCTTGTGATAACATGCT
CAGCAGGTGACTCACAGACAATTGTGATTGGTCTGGCGGCAGACTCGGGG
TGTGGCAAGAGCACGTTCATGAGGAGACTAACAAGCGTCTTTGGTGGAGC
AGCAGAGCCACCAAAGGGCGGCAACCCTGACTCAAACACTCTCATCAGCG
ACACCACCACTGTGATTTGCTTAGATGATTATCACTCGCTTGACAGAACT
GGAAGAAAAGAAAAGGGTGTCACTGCACTTGATCCTAGAGCCAACAATTT
TGATCTTATGTATGAACAGGTTAAGGCTATGAAAGATGGAGTGTCTGTTG
AAAAGCCCATTTACAATCATGTCACCGGTCTCTTGGACCCCCCCGAGCTC
ATCAAGCCCCCCAAGATCCTTGTCATTGAAGGCTTGCACCCAATGTATGA
TGCTCGGGTGAGAGAGCTCTTGGACTTTANTATCTATTTGGACATTAGCA
ATGAGGTTAAATTTGCATGGAAAATTCANAGAGACATGACAGAGCGAGGA
CACAGTCTTGAGAGCATCAAGGCTAGTATTGAAGCCCGAAGCCAGATTTG
ATGCCTATATTGATCCCAAAAGCATATGCTGATGCAGTGATNGAAAGTGT
ACAACCCACTGATTTCGACATATGAAAGAAAGGTTGAA
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