EY650033

Overview
NameEY650033
Unique NameEY650033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1209 contig Csv1_Contig1209:98..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650033 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.545e-35
Identity = 74/177 (41.81%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  174 GSRPDTFYTSEAVRSISSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHS 704
            G + D F        +++++ SDL++++    + LHK+PLLS+  ++ RL  ES +     I+ L D PGG +AFEL +KFCYG+ + L+A NI   RCAAEYL+MTED+E+GNLI+K E F +  +L  WRDSI+ L+S +    W+E+L I  RC E+IA K  ++P  +  +++
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDP-TILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYT 207          
BLAST of EY650033 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.919e-34
Identity = 73/188 (38.83%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  186 DTFYTSEAVRSISSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQ--------IVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGKG 725
            D F   +    ++S++ SDL+++V    + LHK+P++S+  R+ R   ES  + + +        +V++ D PGG  +FEL A+F YG+ + L+A NI   RCAAEYL+MTE++E+GNLI+K E F +  +L  WRDSI  L+S +A   W+E+L I  RC E+IA K   +P  V  +++ +  G G
Sbjct:   34 DGFVRRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSG 221          
BLAST of EY650033 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.489e-33
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  156 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSE-SPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPS 683
            M  MKLGS+ D F         ++ + SD++++V    + LHKFPLLS+   ++R  +E S E     ++++ D PGG   FEL AKFCYG+ + L+A N+V  RCAAE+L+MTE+  +GNLI + E FFN  +L  W+DSI  L S      ++++L IT +CIE++A +  T P+
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPN 177          
BLAST of EY650033 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.079e-27
Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  219 ISSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSH-SYSRRGK 722
            I  +V SD+ I+V G  + LHKFPL+S+  R++R+ +E  +S   + V+L + PGG + FEL AKFCYGI   +++ N+    C ++YL+MTE+  K NL  + E +  S +       +  L+ ++     +++L I  RCI+AIASK        S S   YS  G+
Sbjct:   37 IFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISK-VELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGR 204          

HSP 2 Score: 30.0314 bits (66), Expect = 3.079e-27
Identity = 17/44 (38.64%), Postives = 24/44 (54.55%), Query Frame = 1
Query:  781 WWAEDMAELGIDLYWENHDSIKSGGKIPLNLVGEALKIXASRWL 912
            WW ED++ L IDLY    +++K  G  P   +G +L   A R L
Sbjct:  220 WWIEDLSVLRIDLYQRVMNAMKCRGVRP-ESIGASLVSYAEREL 262          
BLAST of EY650033 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.308e-21
Identity = 53/148 (35.81%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  222 SSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASK 665
            S ++ +D++++V  + + LHKF L++K   +++L  ES +S   +I  L D PGG + FE  AKFCYG+   ++  N+ A  CAAE+LQMT+     NL  + + F +   L     +IV L+S +     S DLGI  RC++ + +K
Sbjct:   27 SQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRI-NLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAK 173          
The following BLAST results are available for this feature:
BLAST of EY650033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH3.545e-3541.81Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ3.919e-3438.83Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH1.489e-3341.24BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH3.079e-2736.09BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH1.308e-2135.81Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-D10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650033 ID=EY650033; Name=EY650033; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGATCATTTTGGCTGGCTGCTGGATAGACTTTTTGTGGGGG
GCAGCTTTTAATAGGTTATGAATGAAGTTGGCTTATCTGAGTCCTTCTGA
GCATTTGGTTAAGATATAAACTTAAGCAAGAGAAGAAAGAGTAGAAGAAT
CAGTCATGAAGTTCATGAAACTTGGATCTCGGCCTGATACCTTCTACACT
TCTGAGGCTGTAAGGTCAATCTCCTCTGAAGTCTCTAGTGATCTCATAAT
TCAAGTGAAAGGAAGTAGATACCTGCTTCACAAGTTTCCTCTGTTGTCCA
AGTGTTTGCGGCTGCAGAGGCTATGTTCTGAGTCCCCTGAATCCTCACAA
CACCAGATAGTCCAACTCCCTGATTTCCCTGGCGGTATCGACGCATTTGA
ACTCTGTGCAAAGTTTTGTTATGGAATTACAATCACTCTCAGTGCCTACA
ATATCGTAGCTGCAAGATGTGCTGCCGAATATTTGCAGATGACAGAGGAT
GTTGAGAAGGGGAACTTGATATACAAGATTGAGGTTTTCTTCAATTCATG
CATCCTTCATGGGTGGAGAGATTCCATTGTGACTCTACAAAGCACTAAAG
CTTTTCCTTTATGGTCTGAGGATCTTGGAATCACGAGCAGATGCATTGAA
GCAATTGCTTCTAAAGTTTTAACTCACCCCTCAAAGGTGAGCTTATCACA
TAGTTACTCTAGGAGGGGGAAGGGATGATATATCTTGTNATGGTGCGGAN
GAGCCAAAGCACAAAGCATCAACCAAAGGCTGGTGGGCTGAAGATATGGC
AGAATTAGGCATAGACCTTTATTGGGAGAACCATGATAGCATTAAATCTG
GTGGAAAGATCCCCCTCAATCTTGTAGGCGAGGCACTGAAAATTNATGCA
TCTCGATGGCTACCCTACATATCGAGAATGGACGTATCATA
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