EY650030

Overview
NameEY650030
Unique NameEY650030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650030 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 3
Query:  120 IYIEAKL*TLHDPRGGGEWMGASD--LVARGDCVMNFAAGPDQIGGARDTDDTVDLDMGAATVKRQTAHSHDRGIDRLDGDRPGLRVYVLGKVHALSKGLRAG*DYQDDHFA-STVVPGICCGPGIPTLADTKITMDPEGDDVGTAANDRKTVLDALGLNAMYDHEGMAYLPKTSLVAHNL-FRSTI*LEGLWVLNL*VKTKAPMTVRWG-RKTVRGRK 761
            I++ A++       G G+ +G     + ARG  VM  +   DQ   A DT  +V++ +G      +  HS+ RG+DR+  D P     V GK  +   G RAG DYQD+    S +       P +  L  +K    P G++V   AND  T L    L A+Y   G+    K +   HN+ ++          LNL  K K+      G  K V+GRK
Sbjct:   85 IFVGAEVGPWSKTGGLGDVLGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIANDWHTALLPCYLKAIYQPMGIYKHAKVAFCIHNIAYQGRFAFSDFPRLNLPDKFKSSFDFIDGYEKPVKGRK 303          
BLAST of EY650030 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 3
Query:  192 LVARGDCVMNFAAGPDQIGGARDTDDTVDLDMGAATVKRQTAHSHDRGIDRLDGDRPGLRVYVLGKVHALSKGLRAG*DYQDDHFA-STVVPGICCGPGIPTLADTKITMDPEGDDVGTAANDRKTVLDALGLNAMYDHEGMAYLPKTSLVAHNL-FRSTI*LEGLWVLNL*VKTKAPMTVRWG-RKTVRGRK 761
            L ARG  VM      DQ   A DT   V+L +G      +  HS+ RG+DR+  D P     V GK  ++  G +AG DY+D+    S +       P +  L  +     P G+DV   AND  T L    L  MY   G+    K +   HN+ ++         +LNL  + K       G  K V+GRK
Sbjct:  111 LAARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRIEPVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSMLYGPKAGKDYKDNQLRFSLLCQAALEAPRVLNLNSSNYFSGPYGEDVVFVANDWHTALLPCYLKTMYQSRGIYMNAKVAFCIHNIAYQGRFAFSDFSLLNLPDEYKGSFDFIDGYDKPVKGRK 303          
BLAST of EY650030 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 58/193 (30.05%), Postives = 84/193 (43.52%), Query Frame = 3
Query:  192 LVARGDCVMNFAAGPDQIGGARDTDDTVDLDMGAATVKRQTAHSHDRGIDRLDGDRPGLRVYVLGKVHALSKGLRAG*DYQDDHFA-STVVPGICCGPGIPTLADTKITMDPEGDDVGTAANDRKTVLDALGLNAMYDHEGMAYLPKTSLVAHNL-FRSTI*LEGLWVLNL*VKTKAPMTVRWG-RKTVRGRK 761
            +   G  VM  +   DQ   A DT   V++ +G +    +  H + RG+DR+  D P     V GK  +   G  AG DYQD+    S +       P +  L  +K    P G+DV   AND  T L    L +MY  +GM    K +   HN+ ++         +LNL  + K+      G  K V+GRK
Sbjct:  111 MAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYKRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAGTDYQDNQLRFSLLCQAALEAPRVLNLTSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSKGMYLHAKVAFCIHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRK 303          
BLAST of EY650030 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 64/219 (29.22%), Postives = 92/219 (42.01%), Query Frame = 3
Query:  120 IYIEAKL*TLHDPRGGGEWMGASD--LVARGDCVMNFAAGPDQIGGARDTDDTVDLDMGAATVKRQTAHSHDRGIDRLDGDRPGLRVYVLGKVHALSKGLRAG*DYQDDHFA-STVVPGICCGPGIPTLADTKITMDPEGDDVGTAANDRKTVLDALGLNAMYDHEGMAYLPKTSLVAHNL-FRSTI*LEGLWVLNL*VKTKAPMTVRWG-RKTVRGRK 761
            I+I A++       G G+ +G     L ARG  VM      DQ   A DT   V + +G      +  H + RG+DR+  D P     V+GK  +   G   G DY D+    S +       P +  L  +K    P G+DV   AND  T L    L +MY   G+    K     HN+ ++     +   +LNL +  K+      G  K V+GRK
Sbjct:   87 IFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRK 305          
The following BLAST results are available for this feature:
BLAST of EY650030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SSG1_MANES2.902e-1130.14Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.790e-1131.09Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA3.790e-1130.05Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH4.950e-1129.22Probable granule-bound starch synthase 1, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-D07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650030 ID=EY650030; Name=EY650030; organism=Citrus sinensis; type=EST; length=822bp
CCTTTTTTTTTTTTTTTGNAAAAAAGGCAAATTTACATTTATACAGCAAA
TTTCTCATTGTTAATAAACTTCATGATCGGGCACCTGGAGTATGATTTGA
AGGTAATTTGGAACTACACATATATATTGAGGCAAAACTTTGAACTCTTC
ATGATCCAAGGGGGGGGGGGGAATGGATGGGAGCATCTGACCTTGTTGCC
CGTGGTGACTGTGTTATGAACTTCGCTGCCGGACCCGACCAAATAGGAGG
TGCTCGGGATACAGACGATACTGTTGATCTGGATATGGGGGCCGCAACGG
TTAAAAGACAAACCGCCCATAGCCACGATAGAGGAATTGATCGGCTGGAT
GGAGATCGTCCTGGGCTTCGCGTGTACGTGTTGGGGAAGGTCCATGCCCT
GTCTAAGGGCCTAAGAGCTGGTTAGGACTACCAAGACGATCACTTCGCTT
CCACTGTTGTGCCGGGCATTTGTTGTGGACCAGGAATTCCGACTCTTGCG
GACACGAAGATTACTATGGACCCTGAGGGGGATGATGTCGGAACTGCTGC
TAATGACAGGAAGACTGTCCTTGATGCCTTGGGCCTGAATGCTATGTATG
ATCACGAAGGCATGGCCTACCTGCCAAAGACTTCTCTGGTGGCGCATAAC
TTGTTCCGAAGTACTATATGACTCGAAGGATTGTGGGTTCTGAACTTGTG
AGTCAAAACGAAGGCCCCAATGACTGTGAGGTGGGGACGAAAGACTGTGA
GAGGTAGAAAATTTCCGGATGAAACTGAACTATTCAGCGGACCAGAGCTA
ACTTGGACCCTCACTAAAGCCA
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