EY650021

Overview
NameEY650021
Unique NameEY650021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650021_ssr59 microsatellite EY650021_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.818e-21
Identity = 81/254 (31.89%), Postives = 135/254 (53.15%), Query Frame = 1
Query:   97 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLCXSCRDKYRQLILKEGA 858
            +++L ++L +  L+T+ +A  ++R ++ K ++  R     +G +  LV +L S +    E+++ ALLNL++ N+ NK  IA AGAI PL+ +L+  +   +E                           LV +L +G+ +G+ DA TAL  LS  +EN + IV + AV  LI+L+      +   +KA A+L  L++  E R AI   +GGI  LVE VE GS    ++A  ALL L  +   ++  ++L+EGA
Sbjct:  543 VKKLVEELKSSSLDTQRQATAELR-LLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA---AGMVDKAVAVLANLATIPEGRNAI-GQEGGIPLLVEVVELGSARGKENAAAALLQLSTN-SGRFCNMVLQEGA 789          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.021e-20
Identity = 79/241 (32.78%), Postives = 119/241 (49.38%), Query Frame = 1
Query:   88 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLC 810
            +  +  L +KL NG  E +  AA ++R + K++ +  R   A AG +  LV +L SP+    E S+ ALLNL++ NE NK  I  AGAI  +VE+LK  +   RE                           L+ +L  G+ +G+ DA TA+  L   + N S  V    V PL  LLKD        ++A A+L ILS+++E + AI  ++  I  LVE +  GS  + ++A   L +LC
Sbjct:  344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRN-VDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAG--GGMVDEALAILAILSTNQEGKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILWYLC 579          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.275e-20
Identity = 86/253 (33.99%), Postives = 124/253 (49.01%), Query Frame = 1
Query:  103 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXX-LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLCXSCRDKYRQLILKEGA 858
            +L + L +G  + K  AA +IR +   +S++ R      G + PL+ +L S      E ++ ALLNL++ +E NK  I   GAI PLV +L   N   +E                            LV +L  G+ +G+ DA +AL  LS   +N + IV A AV  L+ LL    +     +KA ALL  LS+  E R AI   +GGI  LVETV+ GS    ++A   LL LC +   K+  L+L+EGA
Sbjct:  476 KLVEDLKSGSNKVKTAAAAEIRHLTI-NSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLE---MVDKAVALLANLSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLN-SPKFCTLVLQEGA 721          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 84/256 (32.81%), Postives = 126/256 (49.22%), Query Frame = 1
Query:   97 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL---LVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLCXSCRDKYRQLILKEG 855
            +++L D L +  L+T+ EA   IR ++ ++S   R   A    +  LV +L S +      ++  LLNL++ N+ NK  IA +GAI PL+ +LK   G L E                              LV +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+          EKA  +L  L++  E +IAI   +GGI  LVE VE GS    ++A  ALL LC +   K+   +++EG
Sbjct:  423 VKKLIDDLKSSSLDTQREATARIR-ILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA---FGMVEKAVVVLANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQLC-THSPKFCNNVIREG 669          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.603e-19
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 1
Query:   97 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLC 810
            IE+L  +L  G+ E +  AA +IR + K+++   R   A AG +  LV +L +P+    E S+ ALLNL++  E NK  I +AGAIP +V++LK  +   RE                           LV +L+ G+ +G+ DA TAL  L   + N    + A  +P L  LL +    S   ++A A+L ILSS  E +  I +SD  + +LVE +  GS  + ++A   L+ LC
Sbjct:  354 IEDLMWRLAYGNPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSIC-ENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTE--PGSGMVDEALAILAILSSHPEGKAIIGSSDA-VPSLVEFIRTGSPRNRENAAAVLVHLC 586          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 75/247 (30.36%), Postives = 123/247 (49.80%), Query Frame = 1
Query:   67 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFL 807
            ++ N++K   +  L + L +  LE +  + + +R + +++  + R   A AG +  LV +L  P+    E+++  LLNL++ +E NK  I+  GAIP ++E+L+  N   RE                           LV +L  G+++G+ DA+TAL  LS    N    +DA  V PL+NLLKD  K     ++A ++L +L+S  E R AI      I TLVE +  G+  + + A   LL L
Sbjct:  372 DSQNEQKDE-VSLLVEALSSSQLEEQRRSVKQMRLLARENP-ENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKD--KNLGMIDEALSILLLLASHPEGRQAI-GQLSFIETLVEFIRQGTPKNKECATSVLLEL 612          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 69/245 (28.16%), Postives = 116/245 (47.35%), Query Frame = 1
Query:   97 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLCXSCRDK 828
            I  L  KL +  +E +  A  +IR + K+S+   R   A AG +  LV +L S  + +  E+++  +LNL++  E NK  I  AGA+  +V +L+  +   RE                           LV +L  GSV+G+ DA TAL  L   + N    V A  V PL+ +L D     + A++A  +L +L+S++  + AI  ++  I  L++ ++     + ++A   LL LC    +K
Sbjct:  343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRST-DNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIY-EHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSS-ERMADEALTILSVLASNQVAKTAILRAN-AIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEK 583          
BLAST of EY650021 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 71/261 (27.20%), Postives = 122/261 (46.74%), Query Frame = 1
Query:   97 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIVDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEERRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLFLCXSCRDKYRQLILKEGASXGFCD 876
            IEEL  KL +   E +  AA +IR + K+++   R   AA+G +  LV L+ +S +    E ++ ++LNL++  E     + ++GA+P +V +L+  +   RE                           LV +L  GS +G+ DA TAL  L   + N    V A  VP L+ LL + +  S   +++ ++L ILSS  + +  +  +D  +  LV+ +  GS  + +++   L+ LC      + Q  L E    G  D
Sbjct:  357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNN-HNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE--SGMVDESLSILAILSSHPDGKSEVGAAD-AVPVLVDFIRSGSPRNKENSAAVLVHLC-----SWNQQHLIEAQKLGIMD 608          
The following BLAST results are available for this feature:
BLAST of EY650021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PUB4_ARATH7.818e-2131.89U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB14_ARATH1.021e-2032.78U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB3_ARATH2.275e-2033.99U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB2_ARATH1.926e-1932.81U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB13_ARATH5.603e-1932.77U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB15_ARATH6.849e-1730.36U-box domain-containing protein 15 OS=Arabidopsis ... [more]
PUB10_ARATH1.865e-1428.16U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB12_ARATH1.579e-1327.20U-box domain-containing protein 12 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-C10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650021 ID=EY650021; Name=EY650021; organism=Citrus sinensis; type=EST; length=890bp
CACAGCCAAAGAATAGCCATGGGGCGTGGAGAGAACAAAAACAAAGCGGC
GACAGACCAAGAAGAAGAAGCATGGAACCAAAGGAAGCAAGCTCTTATTG
AGGAATTATCAGACAAGTTAATAAATGGAGATCTTGAGACCAAAATAGAA
GCAGCTAGAGATATCAGAAAAGTTGTTAAAAAGTCATCTTTAAAGACAAG
ATCAGAGTTTGCAGCTGCTGGTGTGGTTCAACCTTTGGTGTTGATGCTTG
TTTCTCCTAATCTTGATGCCATTGAATCCTCTCTCCTTGCCCTCCTCAAT
CTCGCTGTTAGAAATGAACGAAACAAAGTCAAGATAGCAACAGCCGGCGC
CATCCCCCCACTTGTGGAGCTTCTTAAGTTCCAAAATGGTACGTTGAGGG
AATTAGCCGCAGCCGCGATCTTAACTCTCTCAGCTGCTGCACCCAATAAG
CCAGCCATTGCTGCTTCTGGAGCTGCACCTCTTCTGGTACAGATTCTCCA
CTCTGGAAGTGTTCAGGGAAGAGTTGATGCTGTTACAGCCCTACACTATC
TCTCCACCTGTAAAGAGAATTCCAGTCCAATTGTAGATGCTACAGCGGTT
CCCCCTTTAATCAATCTTCTGAAAGATTGCAAGAAATATTCAAAGTTTGC
TGAGAAGGCTACAGCATTGCTTGAAATCCTTTCCAGCTCAGAAGAAAGGC
GAATTGCAATCACAAATTCAGATGGTGGGATATTAACCCTTGTAGAGACT
GTTGAAGATGGATCACTTGTCAGCACCCAACATGCAGTTGGAGCGCTTCT
TTTCTTATGCCANAGCTGTCGGGATAAGTACAGACAACTCATTCTCAAAG
AAGGTGCATCCCANGGCTTCTGCGACTGACGGTAGAGGGT
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