EY650012

Overview
NameEY650012
Unique NameEY650012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:315..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.262e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +VDVPD+RGRTEILKVHGSNKKFD DVSL+VIAMRT  FSG              GRRG+ AISSKEIDDSIDRIVAGMEGTVMTDG+SKSL AYHE G  ICGTLTP HDPVQK  L
Sbjct:  380 SVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL 497          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.961e-39
Identity = 82/118 (69.49%), Postives = 90/118 (76.27%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +VDVPD++GRT+ILKVH  NKKF++ VSL+VIAMRT  FSG              GRRGK AISSKEIDDSIDRIVAGMEGTVMTDG+SKSL AYHE G  ICGTLTP HD VQK  L
Sbjct:  386 SVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTL 503          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.462e-38
Identity = 79/118 (66.95%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +VDVPD++GRT+ILKVH  NKKFD DVSL++IAMRT  FSG              GRR + +ISSKEIDDSIDRIVAGMEGTVMTDG+SKSL AYHE G  +CGTLTP HD VQK  L
Sbjct:  393 SVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTL 510          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.444e-32
Identity = 73/118 (61.86%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +V +PDIRGR EILKVH  +KK D DVSL VIAMRT  FSG              GRRGK  I+  EIDDSIDRIVAGMEGT M DG+SK++ AYHE G  IC TLT  HDPVQK  L
Sbjct:  390 SVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTL 507          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.108e-30
Identity = 69/118 (58.47%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +V +PD+RGR EIL VHG+NK+ D  VSL V+AMRT  FSG              GRRGK  I+  EIDDSIDRIVAG+EGT MTDG+SK L AYHE G  +C TLT  HD VQK  L
Sbjct:  388 SVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLEGTSMTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTL 505          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.688e-26
Identity = 61/118 (51.69%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            TVDVPD++GR EIL VH  NKK D  +SL++IA RT  FSG               RR K  I+  EID SIDR++AGMEG  + D ++K L AYHE G  I GTL   HDPVQK  L
Sbjct:  339 TVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTL 456          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.073e-25
Identity = 62/117 (52.99%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            VD PD  GR EIL+VH  NKK   +VS+D IA RT  FSG               RR K+AI+  EIDD++DR+VAGMEGT + D +SK L AYHE G  I GTL   HDPVQK  L
Sbjct:  339 VDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTL 455          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.401e-25
Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +VDVPD RGR  IL+VH  NKK ++ VSL+ IA RT  FSG               RR K+A++  EID SIDR+VAG+EGT + D +SK L AYHE G  I G+L   HDPVQK  L
Sbjct:  339 SVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVVAGLEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTL 456          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.325e-25
Identity = 61/118 (51.69%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            +VDVPD +GR  IL+VH  NKK +  VSL+ IA RT  FSG               RR K A++  EID SIDR+VAGMEGT + D +SK L AYHE G  I G+L   HDPVQK  L
Sbjct:  339 SVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTL 456          
BLAST of EY650012 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.643e-24
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTTWFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGRSKSLGAYHEXGPRICGTLTPXHDPVQKSPL 354
            TVD PD++GR  IL +H  NKK   +V L  IA RT  F+G               RR K AI+  E++D+IDR+VAGMEGT + D +SK L AYHE G  + GTL P HDPV+K  L
Sbjct:  377 TVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVNDAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDPVEKVTL 494          
The following BLAST results are available for this feature:
BLAST of EY650012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
FTSH2_ORYSJ1.262e-4274.58Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.961e-3969.49Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH2.462e-3866.95Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH3.444e-3261.86Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ1.108e-3058.47Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_GUITH3.688e-2651.69Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH1_SYNY31.073e-2552.99Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_PORPU1.401e-2551.69Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE5.325e-2551.69Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH2_SYNY32.643e-2448.31Cell division protease ftsH homolog 2 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-B12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650012 ID=EY650012; Name=EY650012; organism=Citrus sinensis; type=EST; length=365bp
ACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGGTTCA
CGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATAGCCA
TGAGAACCACCTGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAATGAG
GCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTAAAGA
GATTGATGATTCNATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCA
TGACAGATGGGAGGAGTAAAAGTCTTGGTGCATACCATGAAGNTGGCCCA
CGCATATGCGGAACTTTGACTCCAGNACACGATCCCGTNCAAAAGTCACC
CTTGTCCACGTGGTC
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