EY650009

Overview
NameEY650009
Unique NameEY650009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650009_ssr35 microsatellite EY650009_ssr35:35..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8766 contig Csv1_Contig8766:18..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY650009 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 59/110 (53.64%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:  568 RFAGKSKEEAAAIRIQTAFRGYXXXXXXXXXXXXXXXXXXMEGPVVKRPAANTLRCMQTLSRLQSQIRSRKVXMSEENQALQRQLLQNMLXSLHAXGGXIGMTPYSPKSK 897
            RFAGKSKEEAAAI IQ+ FRG+                  MEG VV+R AA TL+CMQTLSR+QSQIRSR++ MSEENQA  +QLLQ     L       G   YS +SK
Sbjct:  100 RFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLKNG-GNWNYSNQSK 208
The following BLAST results are available for this feature:
BLAST of EY650009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD1_ARATH1.179e-1953.64Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-B09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650009 ID=EY650009; Name=EY650009; organism=Citrus sinensis; type=EST; length=914bp
AAAAAAGCCTCTCCCCANGCGTNNGNTNTTTTTAACACACACACACACAC
ACACACACCCCAACTCATCTTCAACAACAGCAACAACATTTCAAAGGTTC
AATCTTTTTGTTATGTTCTGTAACTAGAAAGAAAAACACGCAACCCCATC
TTCCTGTTTTGTCTTTTCCCATTCAACTTTCTTAGCTTGTTTGAGATCTG
GCGGTTACCACTTTTGGTCTTTTCCACTGTAATTGAGGAATGATAAGGTG
ATGGGGAAAAAAGGAAAGTGGTTTGCTAGTGTAAAGAATGCTTTCAGCCC
AGAATCCAAGGAGAAGAAAGACAAGAAATCGAAGAAGAAATGGTTTGGGA
AGCAAAAAGAAGGTTCCAATTCTGCTCCTTTAGAAACTGTCAAAACAACG
CTGCCTCCTCCCGCTCCTCCTCTTCAGCCAGAGGAGGTAGAAATAACTGT
AGCGGAGAATGAGCTGAGCAACCATGTAGCAAATGAGGAAGTTATTACTG
CAGTGCCTGCAATGGCTGCTGTTTCTGCTGATCAGTCTGTAACTGAGGTT
CGAATTGTGACAATACTCGCTTTGCTGGAAAGTCAAAAGAGGAAGCAGCA
GCAATTAGGATTCAAACAGCTTTCCGTGGTTACTTGGCAAGAAGGGCATT
GAGAGCTTTGAGAGGTCTTGTCAGGCTAAAATTGCTTATGGAAGGACCAG
TGGTGAAAAGACCAGCTGCTAACACCCTTAGATGCATGCAAACACTCTCC
CGTCTGCAGTCCCAAATTCGTTCTAGGAAGGTCANGATGTCAGAAGAGAA
TCAAGCTCTCCAGAGACAACTCCTGCAAAACATGCTAAANAGCTTGCATG
CANATGGGGGANGAATTGGGATGACACCCTACAGTCCAAAGAGCAAGTTG
AACCGAATTTGCTC
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