EY649993

Overview
NameEY649993
Unique NameEY649993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649993_ssr52 microsatellite EY649993_ssr52:52..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.994e-31
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGN-SNGVPIGGQGESGAFKCFWSGGVAGR 726
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G  +     GG G  G  +    GG  GR
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGSGGFGGGGGTRRGTRGGSRGR 226          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.812e-31
Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGN-SNGVPIGGQGESGAFKCFWSGGVAGR 726
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN G  +     GG G  G  +    GG  GR
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGR 226          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.518e-30
Identity = 77/154 (50.00%), Postives = 101/154 (65.58%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCG--NSNGVPIGGQGESG 687
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G    N   +GG G  G
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGVLGGFGGGG 211          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGGQGESGAFKCFWSGGVAGR 726
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G        G    G  +    GG  GR
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGR 224          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGGQ-GESGAFKCFWSGGVAGR 726
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     P GG  G SGA +    GG  GR
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGITRPRGGAIGFSGANRRGGRGGNRGR 229          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.738e-29
Identity = 91/239 (38.08%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  109 MSSALYMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCG----NSNGVPIGGQGESGAFKCFWSGGVAGRRDLE*VLDLEXYVWKKIC*DLDAGLDMF 810
            M+  + MSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTADV + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA + N G    +      GG+G  G       G   GR   +  L  E         +LDA LD +
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQSGNRGGMTRSRGSGGFGGRGSQG------RGRGTGRNSKQQQLSAE---------ELDAQLDAY 211          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.207e-28
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGG 672
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     P GG
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGVTRPRGG 207          
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.499e-27
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 1
Query:  235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGG 672
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+ M I++V + I  +   P  + + G     P GG
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQ-RRPIQSQSRGGGVARPRGG 206          
The following BLAST results are available for this feature:
BLAST of EY649993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_BOVIN3.994e-3148.19THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_HUMAN6.812e-3147.59THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_TAEGU1.518e-3050.00THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_MOUSE4.416e-3046.67THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_XENTR9.837e-3047.59THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
REFP2_MOUSE3.738e-2938.08RNA and export factor-binding protein 2 OS=Mus mus... [more]
THO4A_XENLA9.207e-2847.62THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA3.499e-2746.94THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-A04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649993 ID=EY649993; Name=EY649993; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGCTCCTCAGCCTTCCTCTCTTTCTACTTTTCCTCTTAGAT
TTCTCTCTCTCTTATTACGATTTTATCTTTGATTTTCTATTTTTTGTTAT
AGTAAAAAATGTCAAGCGCTTTATATATGTCTCTTGACGATATCATCAAG
AACAACAAAAAGTCTGGATCTGGCAACTTCCGGGGCCGGGGTCGAGGATC
CGGACCCGGCCCTGCTCGTCGCATCCCCAATCGTGGTGCAAACCGTGTGG
CGCCGTATACCACCGCCAAAGCGGAGACGACGTGGCAGCACGATATGTTT
GCAGATCAGGTGAGTGCTTTCCCGGTACAGCAGGCGGGGCGGGCTTCAGC
TATAGAGACTGGAACGAAGCTGTACATATCAAATCTGGATTACGGTGTCT
CTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTGGTGACTTGAAGCGG
TACTCAATCCATTATGATAGAAGTGGGAGATCAAAGGGAACGGCAGATGT
TGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGTCAAGAGATACAACA
CTGTGCAGCTTGATGGGAAGCCGATGAAAATTGAGATTGTGGGAACAAAC
ATTGCAACCCGTACTGCAGCTCCAGCTGCTAATGTCAACTGTGGAAATTC
AAATGGTGTTCCTATAGGTGGACAAGGAGAGAGTGGTGCATTCAAATGCT
TCTGGAGTGGGGGGGTGGCCGGCCGCCGGGATTTGGAATAAGTCTTGGAC
CTGGAANAATACGTATGGAAAAAAATCTGCTGAGATCTTGATGCTGGATT
GGACATGTTTATTCACATCCTCAGGAGCATGGGACAAATTGAAGCGTTAT
TGGGTAATTGCTAAAGCTCCATCTTTTCATGACAAATTGGCGTGAGACGC
ACACGAATTCTTTTGGTTGGCATTTCACAA
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