EY649993
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.994e-31 Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGN-SNGVPIGGQGESGAFKCFWSGGVAGR 726 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G + GG G G + GG GR Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGSGGFGGGGGTRRGTRGGSRGR 226
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 134.806 bits (338), Expect = 6.812e-31 Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGN-SNGVPIGGQGESGAFKCFWSGGVAGR 726 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I + PA +VN G + GG G G + GG GR Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGR 226
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.518e-30 Identity = 77/154 (50.00%), Postives = 101/154 (65.58%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCG--NSNGVPIGGQGESG 687 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G N +GG G G Sbjct: 67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGVLGGFGGGG 211
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30 Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGGQGESGAFKCFWSGGVAGR 726 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA ++N G G G + GG GR Sbjct: 69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGR 224
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30 Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGGQ-GESGAFKCFWSGGVAGR 726 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I + P + + G P GG G SGA + GG GR Sbjct: 73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGITRPRGGAIGFSGANRRGGRGGNRGR 229
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.738e-29 Identity = 91/239 (38.08%), Postives = 120/239 (50.21%), Query Frame = 1 Query: 109 MSSALYMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCG----NSNGVPIGGQGESGAFKCFWSGGVAGRRDLE*VLDLEXYVWKKIC*DLDAGLDMF 810 M+ + MSLDDIIK N+ G NR APY+ K WQHD+F G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTADV + RRADA+ A+K+Y V LDG+PM I++V + I + PA + N G + GG+G G G GR + L E +LDA LD + Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQSGNRGGMTRSRGSGGFGGRGSQG------RGRGTGRNSKQQQLSAE---------ELDAQLDAY 211
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 9.207e-28 Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGG 672 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+PM I++V + I + P + + G P GG Sbjct: 70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGVTRPRGG 207
BLAST of EY649993 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.499e-27 Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 1 Query: 235 GANRVAPYTTAKA-ETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTADVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNCGNSNGVPIGG 672 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTADV + R+ADA+ A+K+YN V LDG+ M I++V + I + P + + G P GG Sbjct: 69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQ-RRPIQSQSRGGGVARPRGG 206 The following BLAST results are available for this feature:
BLAST of EY649993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY649993 ID=EY649993; Name=EY649993; organism=Citrus sinensis; type=EST; length=930bpback to top |