EY649984

Overview
NameEY649984
Unique NameEY649984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649984_ssr27 microsatellite EY649984_ssr27:27..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY649984 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 4.412e-44
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 1 
Query:  133 CTSQRLTNNKKPYDSCLDLPTLSSYLHYTYNATNSSLSIAFVSTPASPDG-WVAWAINPTAKGMAGSQALIALKSSGSL--VVKTYNIISYSNLTESKLSFQTWDLKAESGASGTTVIYGKLKVPEKAETLNQVWQVGAHVANGHPMKHEFKQANLQAKGPLNLVK--KPGS 633
            C SQ L N+  P+DSC DLP L+SYLHYTYN++NSSLS+AFV+TP+  +G WVAWAINPT   MAGSQA +A +S G    VVKTYNI SYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G +V NG P  H F   NL +   L+  +   PGS
Sbjct:   29 CKSQNL-NSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of EY649984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH4.412e-4454.65Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649984 ID=EY649984; Name=EY649984; organism=Citrus sinensis; type=EST; length=973bp
CCAGCGTCCGAAAGAACACATCTCTGTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAAATTGTTAACAATGGCGTTGGCCGTGGTACTCCTTTCCATCTCGG
TCTTGCTAATCTCACCGGCTCATTCCCTCACCTGCACCTCGCAGAGACTC
ACCAACAACAAGAAGCCCTACGACAGTTGCCTCGATCTCCCCACTTTGAG
CTCTTACCTCCACTACACGTACAACGCCACGAACTCGTCTCTCTCCATCG
CCTTCGTGTCGACTCCGGCGTCGCCCGACGGCTGGGTCGCGTGGGCCATC
AACCCGACGGCTAAGGGCATGGCCGGATCCCAGGCCCTCATCGCCCTCAA
ATCCAGCGGCTCCCTCGTCGTCAAGACTTACAACATCATCTCCTACTCCA
ACCTCACCGAATCAAAACTCTCGTTCCAAACCTGGGACTTGAAGGCCGAA
TCCGGTGCCAGCGGGACCACCGTCATTTACGGTAAGCTCAAGGTTCCGGA
GAAAGCGGAGACGTTGAACCAAGTGTGGCAGGTGGGTGCTCATGTGGCCA
ATGGACATCCCATGAAACATGAGTTTAAGCAGGCGAATCTTCAAGCCAAG
GGGCCATTGAATTTGGTCAAGAAGCCCGGTAGTTTGACGCCGGCGTCNGC
GCCGACTCCCGGTACCCCCGGTAGCCCCCGGCGTTCCTTCTCCCGCAGGG
GCGGACAGTCGATGATAGAGCTAATGTTGNTGGATTGTTATGGNNGGTGG
NTTCTGTTTCTTGTAACCAGTTCCGCTTTGTAACTTTCTGAGTTTTGGNT
TTTATTATTTTTTTTATTTTTAGNATNNTGCTGNAGTATTATCCGCATTT
GTCATTGGAGATCTCTGTGNTTTATTTTTTCGCGATAAATAATATATTAT
GTTTTACATTTTTGCTAAAAAAAAAAAAAAAAAGGGCNNGCGTCTAAAGA
ATCAGCTACNTACCNTGCATGCA
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