EY649979

Overview
NameEY649979
Unique NameEY649979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649979_ssr675 microsatellite EY649979_ssr675:675..686. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6951 contig Csv1_Contig6951:1..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY649979 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.081e-18
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  300 STEYVVKGSYKEIPQELVDELK------AICQDDMTMDYEERYIHGKPQNSFHKAVNI-PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMK---SVKALHIEDMD 653
            S EY  K ++ +   EL D L+       + +DD+    +  +      NS H   N  P+I+++PR+ ++VSK++K C K+ +P+IP+ G TS+EGH L    G C+ L + K    +  L+ ED+D
Sbjct:   91 SPEYCDKETFAKALVELKDVLENDPENFTVAKDDLDAHSDTYF------NSHHAEANQRPEIVLYPRNTEDVSKLLKICHKYSIPVIPFSGGTSLEGHFLPTRPGSCVVLDISKYLNKIIQLNKEDLD 212          

HSP 2 Score: 39.6614 bits (91), Expect = 5.081e-18
Identity = 21/54 (38.89%), Postives = 25/54 (46.30%), Query Frame = 1
Query:  655 VVVEPGIGWMELNEYLEXXXXXXXXXXXXXXXXXXMCATRCSGFLAVRYGTMRD 816
            VVV+ G+ W ELNEYL                     A  CSG  A RYGTM++
Sbjct:  213 VVVQGGVPWEELNEYLNDHGLLFGCDPGPGAQIAGCIANSCSGTNAYRYGTMKE 266          
BLAST of EY649979 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.545e-16
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  318 KGSYKEIPQELVDELKAIC-QDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIED 647
            +GS   + Q+ V+ LKA+     ++     R  HG  + S H+    PD +V+P++ D+VS++   C    VPIIP+G  T +EG   +  GGVCI+L+ M  +  L+ ED
Sbjct:   21 RGSQGGLSQDFVEALKAVVGSPHVSTASAVREQHGHDE-SMHRC-QPPDAVVWPQNVDQVSRVASLCYNQGVPIIPFGTGTGVEGGVCAVQGGVCINLTHMDQITELNTED 129          

HSP 2 Score: 38.1206 bits (87), Expect = 1.545e-16
Identity = 23/54 (42.59%), Postives = 25/54 (46.30%), Query Frame = 1
Query:  655 VVVEPGIGWMELNEYLEXXXXXXXXXXXXXXXXXXMCATRCSGFLAVRYGTMRD 816
            VVVEPG+    LN +L                   M AT  SG  AVRYGTMRD
Sbjct:  132 VVVEPGVTRKALNTHLRDSGLWFPVDPGADASLCGMAATGASGTNAVRYGTMRD 185          
BLAST of EY649979 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.724e-14
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  333 EIPQELVDELKAICQDD-MTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIED 647
            E+ ++ V+ LKA+     ++     R  HG+ + S H+    PD +V+P++ ++VS++   C +  VPIIP+G  T +EG   +  GGVC++L+ M  +  L+ ED
Sbjct:   26 ELCRDFVEALKAVVGGSHVSTAAVVREQHGRDE-SVHRC-EPPDAVVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQED 129          

HSP 2 Score: 38.1206 bits (87), Expect = 1.724e-14
Identity = 23/54 (42.59%), Postives = 25/54 (46.30%), Query Frame = 1
Query:  655 VVVEPGIGWMELNEYLEXXXXXXXXXXXXXXXXXXMCATRCSGFLAVRYGTMRD 816
            VVVEPG+    LN +L                   M AT  SG  AVRYGTMRD
Sbjct:  132 VVVEPGVTRKALNAHLRDSGLWFPVDPGADASLCGMAATGASGTNAVRYGTMRD 185          
BLAST of EY649979 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 5.406e-12
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 3
Query:  456 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMK 620
            P II+FP + +EVSKI+K C  + +P++P+ G TS+EGH L    G  I + L K
Sbjct:  151 PRIILFPHTTEEVSKILKICHDNNMPVVPFSGGTSLEGHFLPTRIGDTITVDLSK 205          

HSP 2 Score: 35.4242 bits (80), Expect = 5.406e-12
Identity = 17/54 (31.48%), Postives = 24/54 (44.44%), Query Frame = 1
Query:  655 VVVEPGIGWMELNEYLEXXXXXXXXXXXXXXXXXXMCATRCSGFLAVRYGTMRD 816
            + V+ G+ W +LN+YL                     A  CSG  A RYGTM++
Sbjct:  220 ITVQAGLPWEDLNDYLSDHGLMFGCDPGPGAQIGGCIANSCSGTNAYRYGTMKE 273          
The following BLAST results are available for this feature:
BLAST of EY649979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DLD1_KLULA5.081e-1832.81D-lactate dehydrogenase [cytochrome], mitochondria... [more]
LDHD_MOUSE1.545e-1635.14Probable D-lactate dehydrogenase, mitochondrial OS... [more]
LDHD_HUMAN1.724e-1433.02Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_YEAST5.406e-1245.45D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-G08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649979 ID=EY649979; Name=EY649979; organism=Citrus sinensis; type=EST; length=894bp
CAACAATGGCGTATTATTCCTTTTGGCTCGCTCGTTTACGATCATCATCA
ACATCCATCCTCAGCAGTCTCCGCACTTCAAAGTTCAGTACTCAGAACAC
ACGCACAAGAACTCTTATCACATTAGCCAGCGACAACAGCTCGAGAAATG
GAACCCCGTTTCAGTTGTTTTCAGCCTCTCTTCTTCCTTTAGCAATCGCT
GCCTCTGCTGGGTCCCTCGCCATTCAATCCCAGACGCACCCTTCTCTCTG
CGACTCCTCAGCTCTTGATTCTCGGGATGTGAACATTGGTGGTAAAGGAA
GTACGGAGTATGTGGTGAAGGGGTCATACAAGGAAATTCCACAGGAGCTT
GTTGATGAACTCAAGGCTATTTGTCAAGATGATATGACAATGGATTATGA
AGAGAGGTACATCCATGGAAAACCACAAAACAGCTTTCACAAAGCAGTTA
ATATCCCCGATATCATTGTGTTCCCCAGGTCTGAAGATGAAGTTTCCAAG
ATTGTCAAGTGTTGTGATAAACATAAGGTCCCTATAATACCATATGGTGG
GGCTACGTCAATCGAGGGTCACACCTTATCTCCTAATGGAGGTGTTTGCA
TTGACCTGTCTTTGATGAAAAGTGTTAAAGCATTACATATTGAGGACATG
GATGGTGGTTGTTGAGCCTGGGATTGGATGGATGGAGCTTAATGAATACT
TGGAGCCATATGGGTTATTCTTCCCTCTTGATCCTGGGCCTGGTGCACCA
TTGGGGGGTATGTGTGCTACCCGCTGCTCTGGGTTCTTGGCTGTGAGGTA
TGGGACTATGCGCGACATGTCATAAATCTGAAGTAGTCTTGCATGGGAGN
ATGTTGTAAGACAGCTCTGTGCTCGAAAGTGCTGCAGGTTATGA
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