EY649972

Overview
NameEY649972
Unique NameEY649972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649972 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.543e-21
Identity = 52/170 (30.59%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  194 KDLLKRFGIDDLKTKNTPMSTTTKLDKDEKGKEMDIKMYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDIGLWYPRGTHID--LTCFSDANFAGYKVDRKNTSGTCY-IL*HSLVLWFSKKQNSVALSTIEAEYIAVGSCCAQALWMK 691
            K +L +F +++    +TP+ +    +     ++ +    R +IG L+Y+   +RPD+  +V + +R+ S         +KR+ RYL GTID+ L + +    +  +  + D+++AG ++DRK+T+G  + +   +L+ W +K+QNSVA S+ EAEY+A+     +ALW+K
Sbjct: 1144 KKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC-RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLK 1312          

HSP 2 Score: 33.113 bits (74), Expect = 1.543e-21
Identity = 11/35 (31.43%), Postives = 26/35 (74.29%), Query Frame = 3
Query:   93 QRIEMSMMGELKYFLGLQIKQNEEGIFINLAKYVK 197
            ++  M+ + E+K+F+G++I+  E+ I+++ + YVK
Sbjct: 1110 EKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVK 1144          
BLAST of EY649972 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 63/176 (35.80%), Postives = 96/176 (54.55%), Query Frame = 2
Query:  200 LLKRFGIDDLKTKNTPMSTTTKLDK-------DEKGKEMDIKMYRGMIGSLLY-LTASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDIGLWYPRGTHIDLTCFSDANFAGYKVDRKNTSGTCYIL*HSLVLWFSKKQNSVALSTIEAEYIAVGSCCAQALWMKQHLE 703
            +L+RF + + K  +TP++   KL K       +EKG    +  Y   +GSL+Y +  +RPDI  +V + +RF   P + H  AVK I RYL GT    L +  G+   L  ++DA+ AG   +RK+++G  +      + W SK Q  VALST EAEYIA      + +W+K+ L+
Sbjct: 1069 VLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQ 1242          
BLAST of EY649972 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.315e-18
Identity = 52/173 (30.06%), Postives = 95/173 (54.91%), Query Frame = 2
Query:  170 FHKSSQVRKDLLKRFGIDDLKTKNTPMSTTTKLDKD-EKGKEMDIKMYRGMIGSLLYLTASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDIGLWYPRGTHIDLTCFSDANFAGYKVDRKNTSGTCYIL*HSLVLWFSKKQNSVALSTIEAEYIAVGSCCAQALW 685
            F   ++  + +L   G+ D K  +TP+    KL+      K  D   +R ++G+L YLT +RPDI ++V +  +    P  +    +KR+ RY+ GTI  GL+  + + +++  F D+++AG    R++T+G C  L  +++ W +K+Q +V+ S+ E EY A+    A+  W
Sbjct:   55 FLSQTKYAEQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225          
BLAST of EY649972 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.163e-11
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  218 IDDLKTKNTPMSTTTKLDKDEKGKEMDIKMYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDIGLWYPRGTHIDLTCFSDANFAGYKVDRKNTSGTCYIL*HSLVLWFSKK-QNSVALSTIEAEYI 652
            I+  K   TP+  +  L +       DI  Y+ ++G LL+     RPDI + V L +RF   P+  HL + +R+ RYL  T  + L Y  G+ + LT + DA+         +T G   +L  + V W SKK +  + + + EAEYI
Sbjct:  153 INTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299          
The following BLAST results are available for this feature:
BLAST of EY649972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
COPIA_DROME1.543e-2130.59Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC2.188e-1835.80Retrovirus-related Pol polyprotein from transposon... [more]
M810_ARATH8.315e-1830.06Uncharacterized mitochondrial protein AtMg00810 OS... [more]
YCH4_YEAST1.163e-1131.97Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-F09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649972 ID=EY649972; Name=EY649972; organism=Citrus sinensis; type=EST; length=904bp
CCAAGACTACTTATTGTTCAAATTTATGTTGATGATATTATTTTTGGTTC
TACTAATGAGTTGTTGTGTAAAGAATTTTCATCGTGTATGAGCAAAGAAT
TGAGATGAGTATGATGGGAGAGTTGAAATACTTCCTTGGACTTCAAATCA
AACAAAACGAGGAAGGAATTTTCATAAATCTAGCCAAGTACGTAAAGATC
TACTCAAACGATTCGGCATTGATGATTTAAAGACCAAGAATACACCAATG
AGCACAACAACCAAGCTGGACAAAGATGAAAAAGGTAAAGAAATGGATAT
CAAAATGTATCGAGGTATGATTGGATCCCTACTTTATTTGACTGCAAGTA
GACCCGATATCATGTTTAGTGTATGTTTGTGTGCAAGATTTCAGTCATGT
CCCAAGGAATCTCATTTACTCGCTGTTAAAAGAATTTTCCGTTATTTGAG
TGGAACCATAGATATTGGCCTTTGGTATCCTAGGGGAACTCATATAGATT
TAACATGTTTTTCGGATGCGAATTTTGCTGGTTATAAAGTGGATAGGAAG
AACACTAGTGGAACTTGCTATATTCTATGACACTCTCTTGTTTTATGGTT
TAGCAAGAAACAAAATTCTGTTGCACTTTCAACTATCGAGGCTGAATATA
TAGCTGTCGGAAGTTGTTGTGCACAAGCACTTTGGATGAAACAACACTTA
GAGATTACGTGTAACGCCACAAATTCCCTACATATTAAATTATGGAAATT
GGGCTTTCATTGAGATTATGGGTGGCCTANTACCCTATTTANAAAGGGGT
ACTAATTAATAGAGGTATTTATGAGATCATTTTGGAAAAGGGCTATTTTC
TTATGNATAGGGTNNNCTAGATCCCTTNAATCATACTTTTCCCCTTNCTA
ACCT
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