EY649956

Overview
NameEY649956
Unique NameEY649956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length981
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9980 contig Csv1_Contig9980:537..1517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649956 vs. ExPASy Swiss-Prot
Match: FRIGI_ARATH (Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.430e-23
Identity = 75/265 (28.30%), Postives = 131/265 (49.43%), Query Frame = 1 
Query:  100 PQLFKLCEEMNSEGLHKFISDNRKNLAVLKEEIPLALKAAADPARLVLDSLEGFYHMEVSNVDGK----KDSSLLGLRRTCIMLMECLSIXXXXXXXXXXXXVISQGVKEQAKAIAEEWKPKLDTLDVDDSNGNSLEAHAFLQLLATFSIASDFNEEELSRLIPMVSRRRQTPDLCRSLGLSEKMPGVIEVLVNSGMQIDAVNLAFAFELTEQFSSVPLLKSYLNGAKNASXSVMG*NMSXSAENEVNDRELSALKAVIKCIXEH 882
            P+  ++CE M S+GL K+I  N  + A L EEIP ALK A +PA+ VLD +  FY      + G+    K+S +   R+  ++++E   +             I   +K++A+  A  W+ +L T +   +    ++A   L L+A F + S+F   +L  LI M         L RS  L   + G++E  +  GM I+A+ + + F + ++FS+  +L S+L  +K +         S  A  E   ++L+ L +V++C+  H
Sbjct:  143 PEGGRMCELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFY------LQGRRAFTKESPMSSARQVSLLILESFLLMPDRGKGKVK---IESWIKDEAETAAVAWRKRLMT-EGGLAAAEKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVSGIVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKESFERAKRKAQSPLAFKEAATKQLAVLSSVMQCMETH 397
The following BLAST results are available for this feature:
BLAST of EY649956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FRIGI_ARATH7.430e-2328.30Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649956 ID=EY649956; Name=EY649956; organism=Citrus sinensis; type=EST; length=981bp
CCCATTGGTNCGCCTGCCAGTTCTCGTCCGGNATTCCCGGGCCGACCCAG
CGTCCGGCAAAAATCGTCTGAGAGTGAAAATATGGAGCTGAAGGCTTATC
CCCAATTATTTAAACTATGTGAAGAGATGAACTCAGAAGGCTTGCACAAA
TTTATATCAGACAATCGTAAGAACCTTGCTGTCCTAAAGGAAGAAATTCC
ACTTGCGCTAAAGGCTGCTGCAGACCCAGCCCGTTTGGTATTGGATTCTC
TAGAAGGTTTTTACCACATGGAAGTGTCAAATGTGGATGGAAAGAAAGAT
TCAAGCTTATTGGGTCTCCGCAGAACCTGTATTATGTTGATGGAATGCCT
TAGCATTTTGTTAGCAAATCTCAATCTGAATACTCTTACTGCTGTTATCT
CACAAGGTGTAAAGGAGCAGGCAAAGGCAATTGCCGAAGAGTGGAAACCA
AAGTTGGATACCCTTGATGTGGATGATAGCAATGGGAACTCCTTAGAGGC
TCATGCTTTCCTGCAACTTCTGGCAACGTTTTCTATTGCTTCTGACTTTA
ATGAGGAAGAATTATCAAGGCTAATACCAATGGTCTCTCGTCGTCGCCAA
ACACCTGATTTATGTCGCTCCCTTGGGTTGTCAGAAAAAATGCCAGGTGT
CATTGAAGTTCTGGTGAATAGTGGAATGCAAATCGATGCAGTTAACCTAG
CNTTTGCATTTGAGCTTACTGAGCAGTTCTCTTCTGTGCCTTTACTGAAG
TCCTACTTGAATGGAGCGAAAAATGCCTCTTNCTCTGTCATGGGCTGAAA
CATGTCTNCCTCTGCTGAGAATGAGGTCAATGATCGAGAGCTGAGTGCCC
TGAAAGCTGTGATCAAATGCATTNGAGAGCATACCNNTGANGAGCAGTAT
NCCATAGATCCTCTNCAAAGCGAATTCTCAGCTAGAGAAGGCCAGGCCGA
AAGAAAAGGCAACTGAGATTGCAAGCCGCAC
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