EY649928

Overview
NameEY649928
Unique NameEY649928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.715e-77
Identity = 133/180 (73.89%), Postives = 150/180 (83.33%), Query Frame = 2
Query:  113 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSPAPMLGTQVGF 652
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNTDPIFPN      + GT VG+
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNK----LTGTDVGY 196          

HSP 2 Score: 149.058 bits (375), Expect = 3.635e-35
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1
Query:  595 PDLPQHKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADP 825
            P  P +KLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMG WFQHIYTGTGPI +L AHLADP
Sbjct:  182 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.743e-74
Identity = 129/180 (71.67%), Postives = 143/180 (79.44%), Query Frame = 2
Query:  113 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSPAPMLGTQVGF 652
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEGRRWADIIKPGCVNTDPIFPN      + GT VG+
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNK----LTGTDVGY 196          

HSP 2 Score: 149.058 bits (375), Expect = 3.635e-35
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1
Query:  595 PDLPQHKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADP 825
            P  P +KLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMG WFQHIYTGTGPI +L AHLADP
Sbjct:  182 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.330e-40
Identity = 70/140 (50.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  206 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSP 622
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  YF  ++T   V M    + E RRW DI  PG VN DPIF + S P
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLP 158          

HSP 2 Score: 53.5286 bits (127), Expect = 7.330e-40
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  595 PDLPQHKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADP 825
            P    + L   + GYPG + F+PL +   +P + KE   KE+ NGRLAMLA +G   QH   G GP  +L  HLADP
Sbjct:  150 PIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADP 219          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.744e-39
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  203 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSPAPMLGTQVGFG 655
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG +               LG + GFG
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ----------YFLGLEKGFG 195          

HSP 2 Score: 76.2554 bits (186), Expect = 2.744e-39
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  +L+ H+ADPV
Sbjct:  202 YPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPV 264          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.575e-39
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  206 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 580
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPG 178          

HSP 2 Score: 78.1814 bits (191), Expect = 3.575e-39
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  628 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  +L+ HLADPV
Sbjct:  197 DPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 262          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.199e-39
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSPAPMLG 637
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  ++TLF++E I   + E RRW DI  PG VN DPIF   S PA  +G
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.496e-38
Identity = 72/143 (50.35%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  209 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTSSPAPMLG 637
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF   S P   +G
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVG 184          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.350e-31
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 2
Query:  197 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNTS 616
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P  S
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPIYPGGS 202          

HSP 2 Score: 71.633 bits (174), Expect = 1.350e-31
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  625 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGCWFQHIYTGTGPIXHLIAHLADPV 828
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI +L  HLADPV
Sbjct:  194 TDPIYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 259          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.987e-31
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRR 556
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L     +    W     G+  Y           T+  +E + I + E +R
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          

HSP 2 Score: 73.1738 bits (178), Expect = 2.987e-31
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG-CWFQHIYTGTGPIXHLIAHLADP 825
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA++G C  Q  Y GTGP+ +L  HLADP
Sbjct:  168 YPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
BLAST of EY649928 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.891e-31
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRR 556
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE +R
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156          

HSP 2 Score: 72.0182 bits (175), Expect = 3.891e-31
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  637 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG-CWFQHIYTGTGPIXHLIAHLADP 825
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLAMLA +G C  Q  Y GTGP+ +L  HLADP
Sbjct:  167 YPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
The following BLAST results are available for this feature:
BLAST of EY649928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB12_PETHY1.715e-7773.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.743e-7471.67Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB120_HORVU7.330e-4050.00Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_PEA2.744e-3940.12Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC3.575e-3942.86Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PEA9.199e-3957.03Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.496e-3850.35Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2B_PINSY1.350e-3135.80Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB11_SOLLC2.987e-3139.45Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.891e-3141.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649928 ID=EY649928; Name=EY649928; organism=Citrus sinensis; type=EST; length=954bp
CGGTCCTCGGTNCCGGNATTCCCGGCCTCGACCCACGCGTCCGCGGACGC
GTGGGAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGGTGCTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTNGACA
TCTCATTGCTCACCTTGCTGATCCTGTCATGCCACCGTTTTTGCTGCCTC
ACCCCCAGTGAGATGATGACGAACAAGGGGAGAGAATTTGGCCAGTGGNA
GCTGAGATCAGGNAATGGTGNTCTCTTAGGGAAGGTGATGATAGAAACTG
ATTA
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