EY649926

Overview
NameEY649926
Unique NameEY649926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 5.840e-113
Identity = 205/259 (79.15%), Postives = 218/259 (84.17%), Query Frame = 1
Query:  127 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXVQ-EWAXPRPMGSLX*SCKHNGLTSLKF 900
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAYPG PLFNPLG GKDEKSMK+ KLKE+KNGRL M+ I GY  +  V         +  L     +N LTSLKF
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKF 272          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.260e-107
Identity = 198/260 (76.15%), Postives = 211/260 (81.15%), Query Frame = 1
Query:  127 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXVQ-EWAXPRPMGSLX*SCKHNGLTSLKF 900
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAYPG P FNPLG GKDEKS+K+ KLKEVKNGRL M+ I GY  +  V         +  +     +N LTSLKF
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKF 274          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.806e-33
Identity = 90/227 (39.65%), Postives = 119/227 (52.42%), Query Frame = 1
Query:  142 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKS-MKDFKLKEVKNGRLGMVGIWG 801
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G   D  YPG   F+PLG G    + +K+ + KE+KNGRL M+ + G
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.874e-32
Identity = 82/201 (40.80%), Postives = 112/201 (55.72%), Query Frame = 1
Query:  205 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKS-MKDFKLKEVKNGRLGMVGIWG 801
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G   D  YPG   F+PLG G    + +K+ + KE+KNGRL M+ + G
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.753e-27
Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  208 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYL 807
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  YPG  +FNPL     +++    K KE+ NGRL M+   G++
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPG-GIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFV 220          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.401e-27
Identity = 82/214 (38.32%), Postives = 109/214 (50.93%), Query Frame = 1
Query:  169 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYL 807
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  YPG  +FNPL      ++    K KE+ NGRL M+   G++
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPG-GIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFI 219          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.324e-23
Identity = 74/186 (39.78%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  253 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYL 807
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y     +  YPGR +FNPL     E      K KE+ NGRL M+   G+L
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGR-VFNPLNFAPLEN-----KEKELANGRLAMLAFLGFL 198          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.058e-21
Identity = 78/208 (37.50%), Postives = 106/208 (50.96%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP----------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 232          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.019e-21
Identity = 82/244 (33.61%), Postives = 120/244 (49.18%), Query Frame = 1
Query:  127 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D  +  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIV 236          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.953e-21
Identity = 77/208 (37.02%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R                     LG   D  YPG   F+PLGL  D  +  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP----------------LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231          
The following BLAST results are available for this feature:
BLAST of EY649926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB13_SOLLC5.840e-11379.15Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.260e-10776.15Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY7.806e-3339.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC3.874e-3240.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH3.753e-2738.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA6.401e-2738.32Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU7.324e-2339.78Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB21_LEMGI1.058e-2137.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA4.019e-2133.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ8.953e-2137.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649926 ID=EY649926; Name=EY649926; organism=Citrus sinensis; type=EST; length=974bp
ATTGGTNACGCCTGCCAGTTCTGGTCCGGNATTCCCGGCTCGACCCCGCG
TCCGANAAACAGAGGAAAAAAGAAATTAAAAATGGCAACCCAAGCTTTGG
TTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGA
GCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGT
TGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGT
TGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCC
GGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGG
AGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTC
GTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGC
AAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGG
TGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACAC
TTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTC
CAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATT
CGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTGGGAGACCTC
TATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTC
AAGCTCAAGGAAGTGAAGAATGGAAGATTGGGCATGGTGGGCATCTGGGG
GTACTTGNTCAAGGTCNNTGTACAGGAGTGGGCCNTACCCAGACCTATGG
GATCACTGGNCTGATCCTGTAAACACAATGGNTTGACTAGCCTCAAGTTC
ACTGAAAGAGAATTTTCTGGTCATGGCTGGGATNATTATNCCAGGCCTGN
ATCCCCACTCTGTCTATCTACTTT
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