EY649905

Overview
NameEY649905
Unique NameEY649905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 68/152 (44.74%), Postives = 86/152 (56.58%), Query Frame = 3
Query:    3 TCGLDQDTCKWKPYSNSSDAFEANATLILIVXXXXXXXXXXXXXXIRCFLRDNNNYDQ*RRTPSPSPXXXXXXXXXXXKPSAEAAAAPT----LVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 446
            TC  +  TC+WKPYSNS+D F ANA+++LI+              IRCFLR     +                     KP  EAAA+ T     +VYS+ ++L GAEAEC ICLSEF  G+ IQVLE+C+HGFH +CI KWL +  SCP CR
Sbjct:   19 TC--NSHTCRWKPYSNSTD-FTANASVLLILVISALICALSLYAAIRCFLRPTLETED------------------DHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCR 149          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 51/140 (36.43%), Postives = 68/140 (48.57%), Query Frame = 3
Query:   39 PYSNSSDAFEANATLILIVXXXXXXXXXXXXXXIRCFLRDNNNYDQ*RRTPSPSPXXXXXXXXXXXKPSAEAAAAPTLVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 458
            PY   ++ F+AN  ++L V              IRC LR +N        PS +                +A  +   V YS  + L G + EC ICLSEFVA + +++L  C HGFH +CI KWL SH SCP CR +CL
Sbjct:   45 PYVGDNN-FDANVVMVLSVLLCALVCSLGLNSIIRCALRCSN------LVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR-HCL 176          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 47/140 (33.57%), Postives = 65/140 (46.43%), Query Frame = 3
Query:   39 PYSNSSDAFEANATLILIVXXXXXXXXXXXXXXIRCFLRDNNNYDQ*RRTPSPSPXXXXXXXXXXXKPSAEAAAAPTLVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 458
            P     +    N  ++L +              IRC LR +  +      PS S            K    A     +V YS  + L G + ECVICLS+FV+G+ +++L +C HGFH +CI KWL  H +CP CR NCL
Sbjct:   46 PLITHENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKK----ALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR-NCL 180          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  270 LVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 458
            +V YS  + L G   ECVICLS+FV+G+ I++L +C HGFH +CI KWL  H +CP CR +CL
Sbjct:  120 VVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR-HCL 181          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  270 LVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 458
            +V YS  + L G   ECVICLS+FV+G+ +++L +C HGFH +CI KWL  H +CP CR +CL
Sbjct:  119 VVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR-HCL 180          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 39/107 (36.45%), Postives = 52/107 (48.60%), Query Frame = 3
Query:  138 IRCFLRDNNNYDQ*RRTPSPSPXXXXXXXXXXXKPSAEAAAAPTLVVYSAGIKLTGAEAECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 458
            +RC LR    +     TP+  P           K  A       + V S   +L     EC+ICL +FV G+ ++VL +C HGFH +CI  WL SH SCP CR + L
Sbjct:   62 LRCVLRCTRRF-----TPNEDPVDTNANVAKGIKKRA----LKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLL 159          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 3
Query:  312 AECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 446
            AEC ICL+EF AGD ++VL +C HGFH  CI  WL SH SCP CR
Sbjct:  109 AECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCR 153          
BLAST of EY649905 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 3
Query:  315 ECVICLSEFVAGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 446
            EC ICL+EF AGD ++VL +C HGFH  CI  WL SH SCP CR
Sbjct:  103 ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCR 146          
The following BLAST results are available for this feature:
BLAST of EY649905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ATL5M_ARATH4.040e-2744.74RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL1L_ARATH3.208e-1636.43RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL1K_ARATH3.547e-1533.57RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL1I_ARATH6.690e-1453.97RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL1J_ARATH1.141e-1352.38RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL5B_ARATH3.671e-1236.45RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1B_ARATH2.379e-1164.44RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL1R_ARATH3.108e-1163.64RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-H04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649905 ID=EY649905; Name=EY649905; organism=Citrus sinensis; type=EST; length=731bp
CAACATGTGGTCTTGATCAGGATACTTGTAAGTGGAAGCCTTACTCCAAC
TCGTCAGATGCTTTCGAAGCGAACGCTACACTCATCCTCATAGTACTCTT
CTGTGCTCTTACATGTGCTTTGGCTCTCAATACTGCCATCCGCTGCTTCT
TACGTGATAATAACAATTATGACCAATAACGCCGTACCCCCTCCCCCTCC
CCCCAAAACCAACATCAGCAGCAGAGAAATAATAATAAGCCAAGTGCTGA
GGCAGCAGCAGCTCCCACGCTGGTGGTGTATTCAGCTGGGATCAAATTAA
CAGGAGCAGAGGCCGAGTGTGTCATTTGCTTGTCCGAATTTGTAGCGGGT
GACGTAATTCAGGTTTTGGAAAGGTGTAAGCATGGCTTCCATTCGCAATG
CATACAGAAATGGTTGTATTCCCACTACTCGTGTCCAATTTGCCGATGCA
ATTGTCTCTTTTCTCCCACATCTACCCCAACCTCACCGNAGCAACCGCAC
TGATGACTTACTAAAAGTCCAGAGCTCATATATATACTTCATTTAGTTGC
GAGGATAATCTAGCTCCTAAGCTATGCGTTTTCAATTTTATTTAATGTCA
TTTCTTATATCTTCACTGGGAAAGTATAANTTAAGCTATCAAACAGAANG
AGTTCGGGATCATTTATATATTGAGATATNCCGAATCTTTTCTGCCAAAA
AAAAAAAAAAAAAAAAAAAAGGCGGNCGTCT
back to top