EY649891

Overview
NameEY649891
Unique NameEY649891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649891_ssr183 microsatellite EY649891_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6947 contig Csv1_Contig6947:1..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649891 vs. ExPASy Swiss-Prot
Match: ASPL1_ARATH (Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.854e-33
Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  238 CMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKXXXXXXXXXXXXXFPSEGSQTHFFGNQXYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSL 678
            C+LF  +  + + A  FSS+L+HRFSDE +    +     S +DS P K S+EY  LL  +D++RQ+  +               PSEGS+T   GN   WLHYTWIDIGTP+VSFLVALD GSNLLW+PC C+QCAPL+++YY+SL
Sbjct:   11 CVLF--LATEETLASLFSSRLIHRFSDEGR----ASIKTPSSSDSLPNKQSLEYYRLLAESDFRRQRMNL-------GAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSFLVALDTGSNLLWIPCNCVQCAPLTSTYYSSL 144
The following BLAST results are available for this feature:
BLAST of EY649891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASPL1_ARATH8.854e-3349.66Aspartic proteinase-like protein 1 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-F11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649891 ID=EY649891; Name=EY649891; organism=Citrus sinensis; type=EST; length=886bp
CTCTTTATCTTATTGGTACTAGGTTTTTGATGTGAAGCACTTACTAACGT
TTCCAAGCGAAAAACGCATCGCATTATTGGCAAAGTTGGCATTTAGGCTA
GTGCGCACATTACAATACACACCGCCTGAGTGCACTTTAGGACTCTCTGC
TCTATCAGCTTTCTACAAAACACAGCTCAGAGCTCACTCACTCAGGTCAC
TCTCCTTTCTGAAAAAATGGTGAATCTTGTGGCGATTTGCATGTTGTTTG
GTTGCATCCTGTTGGACGGATCGGATGCGGTGTCGTTTTCGTCGAAGCTG
GTGCATAGATTTTCCGATGAAGCGAAGGAGAGGTGGATTTCGAAGAGTGG
AAACGTGTCAGTTGCTGATTCGTGGCCGAAGAAGAACAGCGTCGAGTACC
TGGAGCTGCTTTTGAGTAACGATTGGAAACGGCAAAAAACGAGAGTGAAG
TTACAGAGTAATAATAACTCTTCGCGGAATCAATTGTTGTTTCCTTCTGA
AGGAAGTCAAACTCATTTCTTCGGAAATCAGTTNTACTGGTTACATTACA
CGTGGATTGATATTGGGACACCAAACGTTTCGTTTCTTGTAGCATTGGAT
GCTGGGAGCAATTTGCTTTGGGTCCCATGCCAATGCATACAATGCGCTCC
TTTGTCTGCCAGTTACTACACTTCTTTGGTGCCTCCTCGTATTTGGGGCA
TCCATTGTGCAGGATAGAAATCTGAGTGAGTATGATCCATCTTCATCGAG
CACCAGCAAGAATGTCTCTTGCAGTCATCCCTTATGCAAGTCTCGTTCTA
GCTGCAAAAGTTTGAAGGATCCCTGCCTTAATATNGCAGATATTCCACAG
AGATACCTCGAGTTCTGGTTATCTTTGTGACACATT
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