EY649842

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_ANASP (RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 62/197 (31.47%), Postives = 103/197 (52.28%), Query Frame = 2

Query:   14 DKRIELRKNEDE----KVVTKTRKTDSKDEHEKIDKLVREYSYSTDLVSLDWKKMNIPPFLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT 592
            D+ +E + +ED+    K     R+T SK +H           Y+ D + L  +++     L + E   L + +  +    +V+E+L + L R+P D E +EA  +     +  L +GR A++K+++ NLRLV+ + KKY      G  FQDL Q G  GLI A ++F+ ++ ++ STY   WIR AI R++   S T
Sbjct:   46 DEFLEPQTDEDDAKSGKAAKSRRRTQSKKKH-----------YTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 228          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPSB_ANASP (RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.837e-18
Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 2

Query:   77 DSKDEHEKIDKLVREYSYSTDLVSLDWKKMNIPPFLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT 592
            +S  +  K+     E+SY+ D VS+   K+   P LS  +  +  + +Q M V    KE+L + L REPT  E ++   +    + + L  G+ A+ K+I+ NLRLV+ + KKY +       F DL Q G  GL   +++F+P   ++ STY   WIR  I R++   S T
Sbjct:    3 NSTSQVTKLKSKNNEFSYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQK---RNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRT 171          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD1_SYNE7 (RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 53/172 (30.81%), Postives = 93/172 (54.07%), Query Frame = 2

Query:   77 DSKDEHEKIDKLVREYSYSTDLVSLDWKKMNIPPFLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT 592
            + +D   K    VR+ +Y+ D + L  +++     L + E   L + +  +    +++++L + L R P+D E + A      + ++ L  GR A++K+++ NLRLV+ + KKY      G  FQDL Q G  GLI A ++F+ ++ ++ STY   WIR AI R++   S T
Sbjct:   70 EDEDAAAKAKAKVRK-TYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 237          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD2_SYNE7 (RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.001e-16
Identity = 52/182 (28.57%), Postives = 97/182 (53.30%), Query Frame = 2

Query:  128 YSTDLVSLDWKKMNIPPFLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKR 670
            YS DLV    +++     L++ E     + +Q + + +  + +L+  LG EP+  E + A  ++   + + +E G+ A+ K+I+ NLRLV+ + KKY +       F DL Q G  GL   +++F+P + ++ STY   WIR AI R++   S T R+   +     ++++ + +L  +L R
Sbjct:    8 YSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQK---RHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGR 186          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD3_SYNE7 (RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15
Identity = 49/155 (31.61%), Postives = 86/155 (55.48%), Query Frame = 2

Query:  131 STDLVSLDWKKMNIPPFLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLG-REPTDVELSEATYMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT 592
            ++DLV    +++   P L+  E   L K +Q      ++++ LQ + G R+P+D+E + A  +S  ++++   +G  A+ K+I+ NLRLV+ V KKY +         DL Q G  G+   +++F+P + +R STY   WIR AI R++   + T
Sbjct:    8 TSDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLK---RNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKART 159          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_BUCAP (RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpoD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.668e-13
Identity = 84/310 (27.10%), Postives = 133/310 (42.90%), Query Frame = 2

Query:    5 RVGDKRIELRKNEDEKVVTKTRKTDSKD-----EHEKIDKLVREYSYSTDLVSLDWKKMNIPPFLSSTEHTWLFKLMQ-PMKVFVQVKE--QLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKRYQQMKRYCRG*YLP*DVP*SDEGIXSHPFSTFKAWGYTRRVHHWDY--*CRWWLKMKSXTTGSLRAAHDDGLDSL 889
            R+  K+ +   N    ++ + RK + K      E  KI K +    +S      +W K        S+  +W  KL +   KVF  +K+  Q++K+ G           T      + K + +G A    A+ ++++ NLRLV+ + KKY      G +F DL Q G  GL+ A+D+FE +R ++ STY   WIR AI RS+   + T R+   +     ++ R    +L E+ R    +       +P D       I   P S     G     H  D+       L + S T+ SLR+A  D L  L
Sbjct:  264 RLVPKQFDHLVNNMRNMMNRVRKQERKIMKLCIEECKIPKKIFLKIFSGKETDQNWFKKE-----QSSNQSWSKKLEEIKEKVFSSMKKLKQIEKETG----------LTIEQVKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDVLSGL 555          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_PSEAE (RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa GN=rpoD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.717e-13
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 2

Query:  191 TEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELSEA----TYMSAAQVKKCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKR 670
            T+  W+  +++    + +  E+L+ D+ R    +   E+    T     ++ + + +G A    A+ ++++ NLRLV+ + KKY      G +F DL Q G  GL+ A+D+FE +R ++ STY   WIR AI RS+   + T R+   +     ++ R    +L E+ R
Sbjct:  315 TDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVAEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 480          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_SALTY (RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 70/246 (28.46%), Postives = 109/246 (44.31%), Query Frame = 2

Query:  185 SSTEHTWLFKLMQPMKVFVQ----VKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKRYQQMKRYCRG*YLP*DVP*SDEGIXSHPFSTFKAWGYTRRVHHWDY--*CRWWLKMKSXTTGSLRAAHDDGLDSL 889
            + T  TW    +   K + +    V E++Q+ L +     E +  T      + + + +G A    A+ ++++ NLRLV+ + KKY      G +F DL Q G  GL+ A+D+FE +R ++ STY   WIR AI RS+   + T R+   +     ++ R    +L E+ R    +       +P D       I   P S     G     H  D+       L + S TT SLRAA  D L  L
Sbjct:  311 NETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 553          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_SALTI (RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 70/246 (28.46%), Postives = 109/246 (44.31%), Query Frame = 2

Query:  185 SSTEHTWLFKLMQPMKVFVQ----VKEQLQKDLGREPTDVELSEATYMSAAQVKKCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKRYQQMKRYCRG*YLP*DVP*SDEGIXSHPFSTFKAWGYTRRVHHWDY--*CRWWLKMKSXTTGSLRAAHDDGLDSL 889
            + T  TW    +   K + +    V E++Q+ L +     E +  T      + + + +G A    A+ ++++ NLRLV+ + KKY      G +F DL Q G  GL+ A+D+FE +R ++ STY   WIR AI RS+   + T R+   +     ++ R    +L E+ R    +       +P D       I   P S     G     H  D+       L + S TT SLRAA  D L  L
Sbjct:  311 NETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 553          

BLAST of EY649842 vs. ExPASy Swiss-Prot
Match: RPOD_ECOLI (RNA polymerase sigma factor rpoD OS=Escherichia coli (strain K12) GN=rpoD PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 70/246 (28.46%), Postives = 112/246 (45.53%), Query Frame = 2

Query:  185 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE-LSEATYMSAAQVK---KCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLCWIRHAIIRSMTVSSFT-RVTFGLESVRGEMQRAKLDLLFELKRYQQMKRYCRG*YLP*DVP*SDEGIXSHPFSTFKAWGYTRRVHHWDY--*CRWWLKMKSXTTGSLRAAHDDGLDSL 889
            + T  TW    +   K + +    + +++ R    ++ + E T ++  QVK   + + +G A    A+ ++++ NLRLV+ + KKY      G +F DL Q G  GL+ A+D+FE +R ++ STY   WIR AI RS+   + T R+   +     ++ R    +L E+ R    +       +P D       I   P S     G     H  D+       L + S TT SLRAA  D L  L
Sbjct:  309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551