EY649839

Overview
NameEY649839
Unique NameEY649839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649839 vs. ExPASy Swiss-Prot
Match: HRQ1_SCHPO (Putative ATP-dependent helicase hrq1 OS=Schizosaccharomyces pombe GN=hrq1 PE=2 SV=4)

HSP 1 Score: 157.918 bits (398), Expect = 3.105e-38
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 3
Query:   36 GCHTALILRRLRRLCSHVYGSDPSFVFSTATSANPREHCLELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWAAAGRSGRKRKPSLAVYV 701
            G H A +LRR+RR+  +   S   FV  +AT  +P +H  ++  +  ++LI    SP   K FV+WNP                D ++  +   S ISE S L  +  +  +R I FCR RK CE ++   R+ L+ +    L+  I  YRAGY  ++RR+IE + F GKL G+ ATNALELGID+G +D  + +GFP S+++L    GR+GR+ K SLAVY+
Sbjct:  454 GVHVAFVLRRMRRIAEYFGNSQYRFVSCSATIEDPLQHMKKIFGVDNIKLINYTSSPSGSKKFVMWNPPYV-------------DPKHPDDGKKSAISEASKLLIKFAEKRVRTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYI 663          

HSP 2 Score: 21.1718 bits (43), Expect = 3.105e-38
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:    2 IDEAHAYKGAF 34
            +DEAH Y G F
Sbjct:  443 LDEAHVYNGIF 453          
BLAST of EY649839 vs. ExPASy Swiss-Prot
Match: HRQ1_YEAST (Putative ATP-dependent helicase HRQ1 OS=Saccharomyces cerevisiae GN=HRQ1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.166e-36
Identity = 88/229 (38.43%), Postives = 128/229 (55.90%), Query Frame = 3
Query:   36 GCHTALILRRLRRLCSHVY-GSDPSFVFSTATSANPREHCLELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWAAAGRSGRKRKPSLAVYVAFEGP 716
            G H AL++RRL RLC   Y  S   F+  +AT  +P +H  ++  ++ + LI  DGSP   K  V+WNP      +L + +           K  + I E + +  +++ + +R IAFC  R++CEL++   R I  ET    LV  +  YR GY A DRR+IER+ F G L  V +TNALELGID+G +D  L  GFP S+A+    +GR+GR+   SL + VA + P
Sbjct:  433 GSHVALVMRRLLRLCHCFYENSGLQFISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNPP-----ILPQHE----------RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVTEVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQSGRAGRRNNDSLTLVVASDSP 646          
BLAST of EY649839 vs. ExPASy Swiss-Prot
Match: YPRA_BACSU (Uncharacterized ATP-dependent helicase yprA OS=Bacillus subtilis GN=yprA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.172e-36
Identity = 87/227 (38.33%), Postives = 134/227 (59.03%), Query Frame = 3
Query:   36 GCHTALILRRLRRLCSHVYGSDPSFVFSTATSANPREHCLELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWAAAGRSGRKRKPSLAVYVAFEGP 716
            G H A ++RRL+R+C   YGSDP F+ ++AT ANP+E   +L     + L+ ++G+P  +K FV +NP      ++NK            N   S  +EV+ L  E +++ ++ I F RSR   E++LS+ +E++++       SI  YR GY+ ++RR IER    G + GV +TNALELG+D+G + V +  G+PGS+AS W  AGR+GR+   SL + VA   P
Sbjct:  195 GSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG-KPMRLVDDNGAPSGRKHFVFYNPP-----IVNKP----------LNIRRSATAEVNELAKEFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANSTP 402          

HSP 2 Score: 21.1718 bits (43), Expect = 6.172e-36
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:    2 IDEAHAYKGAF 34
            IDE H Y+G F
Sbjct:  184 IDELHTYRGVF 194          
The following BLAST results are available for this feature:
BLAST of EY649839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HRQ1_SCHPO3.105e-3838.57Putative ATP-dependent helicase hrq1 OS=Schizosacc... [more]
HRQ1_YEAST4.166e-3638.43Putative ATP-dependent helicase HRQ1 OS=Saccharomy... [more]
YPRA_BACSU6.172e-3638.33Uncharacterized ATP-dependent helicase yprA OS=Bac... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649839 ID=EY649839; Name=EY649839; organism=Citrus sinensis; type=EST; length=938bp
GATTGATGAGGCTCATGCTTATAAGGGAGCATTCCGGATGCCATACTGCT
CTTATATTGAGAAGACTTCGCCGGCTTTGCTCTCATGTCTATGGTAGTGA
TCCTTCTTTTGTATTTTCTACTGCAACTTCTGCTAATCCTCGGGAGCATT
GCTTGGAGCTTGCAAATTTATCAACATTGGAGCTGATTCAAAATGATGGA
AGTCCTTGTGCTCAAAAGCTTTTTGTCCTCTGGAATCCAACTTCATGTCT
GAGAAGCGTCTTGAATAAAAGTCAGACTGACATGGATGATACACGTAATG
CTGCCAATAAAACTTCAAGCCCAATTTCAGAGGTTTCATATCTCTTTGCA
GAAATGGTTCAGCATGGACTTCGTTGCATTGCTTTTTGTAGATCACGTAA
ACTTTGTGAGCTCGTCTTATCTTACACGCGTGAGATTCTTGAGGAGACAG
CACCCCATCTGGTTGACTCTATATGTGTTTATCGTGCTGGCTATGTAGCT
GAGGATCGAAGGAGAATAGAGAGAGATTTTTTTGGTGGGAAGCTTTGCGG
TGTTGCAGCAACAAATGCTCTTGAGTTGGGTATTGATGTNGGACACATTG
ATGTAACTCTGCATTTGGGTTTTCCTGGTAGTATTGCTAGCCTATGGGCA
GCAGCTGGTAGGTCTGGGAGAAAAAGAAAGCCATCTCTTGCTGTATATGT
TGCATTTGAAGGGCCCTCCTGATCAGTATTTATGAATATCCTGAAAAACT
CTTCAGAGTCCAATTGANTGGTGTCATATTGATGCTCAAATCATAAGGGT
CTTGACCACATCTGGTCTGTGCACACTTGGACACCACTGATTTGATTATG
ATGAGAATTATTTGGATCTGGCTAAGCATGCCATACCACCTTAAAATAGA
GGATTCCAGTCTGAACCTACCTGATCCTCGCTAAATCT
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