EY649824

Overview
NameEY649824
Unique NameEY649824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.053e-19
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLDI 316
            LLEWFAN+YK+FGC+LEFVTNKSQEGSQFC  FGGIGG+LRY LD+
Sbjct:  374 LLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDM 419          

HSP 2 Score: 31.187 bits (69), Expect = 1.053e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  117 NQSNFRDAATSAELEVHE 170
            NQSNF DA T+AELEV E
Sbjct:  353 NQSNFHDAETNAELEVQE 370          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLDI 316
            LLEWFAN+YK+FGC+LEFVTNKSQEGSQFC  FGGIGG+LRY LD+
Sbjct:  373 LLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDM 418          

HSP 2 Score: 26.1794 bits (56), Expect = 4.163e-18
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  114 ANQSNFRDAATSAELEVHE 170
            ++ SNF D+ T+AELEV E
Sbjct:  351 SDTSNFHDSETNAELEVQE 369          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 2
Query:  170 K*SLLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLDI 316
            K SLLEW AN+Y++FGC+LEFVTNKSQEGSQFC  FGGIGGILRY LD+
Sbjct:  372 KLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            ++EWFAN+YK FG SLEFVTNKSQEGSQFC  FGG+GG+LRY +D
Sbjct:  375 IVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVD 419          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
BLAST of EY649824 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  179 LLEWFANDYKQFGCSLEFVTNKSQEGSQFCTWFGGIGGILRYLLD 313
            LLEWFAN+YK+FG +LE VT+KSQEGSQF   FGGIGGILRY +D
Sbjct:  374 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418          
The following BLAST results are available for this feature:
BLAST of EY649824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.053e-1982.61Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH4.163e-1882.61Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.429e-1679.59Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DICDI2.274e-1475.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU9.552e-1375.56Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-A01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649824 ID=EY649824; Name=EY649824; organism=Citrus sinensis; type=EST; length=853bp
GGGGGGTTGGGGGGAGGGGGAAAAAAAAATTTTTTNTNGTTACTGGTACG
CACGCCAGCTCCGTGTCCGNATTCCCGCCTCGACCCACGCGTCCGCTTAA
TCTTATACCAAGAGCCAATCAGAGCAACTTCCGCGATGCAGCCACATCTG
CTGAGTTGGAGGTTCATGAAAATAATCTTTACTCGAGTGGTTTGCCAATG
ATTACAAACAGTTTGGTTGTTCGCTCGAGTTTGTTACCAACAAATCCCAG
GAGGGCTCACAGTTTTGCACATGGTTTGGTGGAATCGGTGGTATACTTCG
CTACCTGCTTGACATTTAATCATATTATGATTCTATCTGACTATGGATGT
GTTCATGAAGATTGTGATTATAAACAAATACCTACCAGAATGATCTGTGA
ACGTTTGTACGATGTGTGAAGAATTTTTGTTGCTACTGCATTGATAGATC
CCTAACAAATAATCTGGGATATTACTGCTTCTGACTTTCTCATATCCCAG
CTGCCCATTTTGTGGATACTAGATTGATTTAATAACATCTATATTCATCC
AATTCTCTGGTTGTACATACAGTCGGGCGCCAAAAATGCTACAGATATAC
GGCCCTTTCTTCCCGCATTCCAATGCCTACTGCGATTCCCCCTCTCATAT
ATTGATTTTAATTGTTTCCTGAATCGTCTGGCCATTGACCTCTTGTCATA
TACGAAAAAAAAAGGTGCGAGCCCTCAAAAGCATTCCGTCGTACGTCCCC
GTCGCGCGCCGCGCTCTTCTGTGTTTGTTACTTCCCCCTAACTTCATCTT
CTGTGTCACGTTTTTTCACCCGCCGTCACGCGCGAAATATTCCAATCCCA
CAT
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