EY649821

Overview
NameEY649821
Unique NameEY649821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649821_ssr253 microsatellite EY649821_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
EY649821_ssr265 microsatellite EY649821_ssr265:265..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.928e-32
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 2
Query:  473 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGF-SHALLLICXRSGWDERLVNDR-PXVGEVVAFXPH-AAWQ 847
            S YDYI+IGGGTAGCPLAATLSQN SVL+LERGG P+ N N++ L +F   L+D+S++S SQ F+S DGV N+RARVLGGGSC+NAGF S A      R+GWD +LV +  P V   +   P    WQ
Sbjct:   61 SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVHQPKLTLWQ 188          
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 2
Query:  353 LRLSFVATLATFLFFHDFCACQKAAPNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAAL-SDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAG-FSHALLLICXRSG--WDERLVNDR-PXVGEVVAFXP-HAAWQS 850
            L+ S V +LAT    HDF   +       F ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG ++ A   I   SG  WD  LVN     V + + F P +  WQS
Sbjct:   20 LQYSEVHSLAT-TSNHDFSYLR-------FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDLVNKTYEWVEDTIVFKPNYQPWQS 183          
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.030e-22
Identity = 66/144 (45.83%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  437 SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAAL-SDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAG-FSHALLLICXRSG--WDERLVNDR-PXVGEVVAFXPHA-AWQS 850
            SF+++AT  +    YDYII+GGGTAGCPLAATLS N SVL+LERG  P   PN+     F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG +  A      ++G  WD  LVN     V + + F P +  WQ+
Sbjct:   40 SFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISDGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNQTYEWVEDTIVFEPDSQTWQT 183          
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.532e-21
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 2
Query:  353 LRLSFVATLATFLFFHDFCACQKAAPNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDL-SSTSPSQRFISEDGVINSRARVLGGGSCLNAG-FSHALLLICXRSG--WDERLVNDR-PXVGEVVAFXP-HAAWQS 850
            L+ S V +LA     HDF   +       F++NA   +    YDYII+GGGT+GCPLAATLS N SVL+LERG      PN   +  F   L       +P +RF+SEDG+ N R+R+LGG + +NAG ++ A       SG  WD  LVN+    V + + + P + +WQS
Sbjct:   20 LQYSEVHSLANTSSEHDFGYLK-------FVYNAVDLELEGSYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVDGFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVEDAIVYKPSNQSWQS 184          
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  440 FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDL-SSTSPSQRFISEDGVINSRARVLGGGSCLNAG-FSHALLLICXRSG--WDERLVNDR-PXVGEVVAFXP-HAAWQS 850
            F++NAT       YDYI+IGGGT+GCPLAATLS+   VLLLERG      PN      F   L       +P +RF+SEDG+ N RAR+LGG + +NAG ++ A +    ++G  WD  LVN     V + +   P + +WQS
Sbjct:   41 FVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPNTLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQTGIEWDLDLVNKTYEWVEDAIVVKPNNQSWQS 183          
BLAST of EY649821 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  440 FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPN-ITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAG-FSHALLLICXRSG--WDERLVNDR-PXVGEVVAFXP-HAAWQS 850
            F+++A   +    YDYII+GGGTAGCPLAATLS N SVL+LERG  P   PN +T+ G       +    +P +RF+S DG+ N R RVLGG S +NAG +  A      ++G  WD  LVN     V + + F P    WQ+
Sbjct:   42 FVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNKTYDWVEDTIVFKPDFQFWQN 184          
The following BLAST results are available for this feature:
BLAST of EY649821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH1.928e-3257.81Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL1_PRUSE2.363e-2242.44(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL3_PRUSE4.030e-2245.83(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL4_PRUSE1.532e-2140.70(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU9.927e-2143.36(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
MDL2_PRUSE8.404e-2044.06(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649821 ID=EY649821; Name=EY649821; organism=Citrus sinensis; type=EST; length=875bp
CCCACGCGTCCGCATCTCTCCAAGCTCTCAATTCGGTGCAAATTAATTAG
TAGCTCATTCCAATGTTGCTTGTATAAACTTCGCTGACACCGGCTTGGCG
GCACCGCATTTCCTCTGAATCTTTGTGTGCGCTTCGGAGGAAATTTAGCT
TCCATTTTCCCGACAAAGTGAGCAAGAAACCTTTGTGCATGCAGAATTTG
TCGTCACCGTATCAGAGCTTGTTGCCTTCTTATTCGACAACAGCAATCCC
CCTATATATATATATGTGTGTGTGTGTGTGCGTGTGTAGAATTAATTGAT
CAAAAGGCCTCAGCGAGAGCTGTTATTTCATGAAATCATGGATCTTGGGT
GCTTGAGATTGTCATTTGTTGCTACTCTTGCTACATTTCTCTTCTTTCAT
GACTTTTGTGCCTGTCAAAAAGCAGCTCCGAACTACAGTTTCATGCACAA
TGCAACTGCGGCACAACCAGTGTCCTACTACGACTACATCATCATCGGAG
GTGGCACCGCCGGCTGCCCGTTAGCCGCCACACTCTCGCAAAACGCCTCC
GTGTTGCTACTTGAACGCGGTGGCTCGCCGTACGGAAACCCCAACATCAC
CAACTTGGGTTCTTTTGGCGCTGCACTCTCTGATCTCTCATCAACCTCTC
CCTCGCAGCGCTTCATCTCCGAAGATGGCGTCATCAATTCCCGTGCCCGC
GTTTTGGGAGGTGGCAGTTGCCTCAATGCCGGCTTCTCACACGCGCTGCT
NCTTATATGTCANAGAAGTGGGTGGGATGAACGNTTGGTGAATGATCGTC
CANTGGTGGGAGAAGTGGTGGCATTCNAGCCGCATGCNGCATGGCAGTCG
CCGTCAAAATGGCTGTAAGTNNAGG
back to top