EY649805

Overview
NameEY649805
Unique NameEY649805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649805 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.915e-48
Identity = 103/191 (53.93%), Postives = 125/191 (65.45%), Query Frame = 1
Query:  109 MVQSKKFIGVMQRQWGSWVSEIRHPLLNMMVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLMKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRS*SSWVMRVELGNNKKAQNLENGLPFPSSRSSPTLVDDEFEAGNGR*DEYXIAMXMIEKLLNW 681
            MV S+KF GV QRQWGSWVSEIRHPLL   VWLGTFET            +LMNGQNAKTNFP++K           +S  +  K  SELLN+KL K CKDL+PSLTCLRLD D+SHIGVWQKRAGS++  +WVMR+ELGN      ++ GL   ++ +   +  +E E      DE  +AM MIE+LLNW
Sbjct:    1 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKRAGSKTSPTWVMRLELGNVVNESAVDLGL---TTMNKQNVEKEEEEEEAIISDEDQLAMEMIEELLNW 188          
BLAST of EY649805 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.636e-43
Identity = 100/194 (51.55%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  109 MVQSKKFIGVMQRQWGSWVSEIRHPLLNMMVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLMKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRS*SSWVMRVELGNNKKAQNLENGLPFPSSRSSPTLVDDEFEAGNGR*DEYXIAMXMIEKLLNWDWP 690
            MV SKKF GV QRQWGSWVSEIRHPLL   VWLGTF+T            VLMNGQ+AKTNFP++K N   +   + +S     K  SELLN+KL K CKD +P LTCLRLDND+SHIGVWQKRAGS++  +WV  VELG+   A+      P     ++   V +E        ++  +AM MIE+LLNW  P
Sbjct:    1 MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNG--SNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAGSKTSPNWVKLVELGDKVNAR------PGGDIETNKMKVRNEDVQ-----EDDQMAMQMIEELLNWTCP 181          
BLAST of EY649805 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.263e-42
Identity = 99/201 (49.25%), Postives = 122/201 (60.70%), Query Frame = 1
Query:  109 MVQSKKFIGVMQRQWGSWVSEIRHPLLNMMVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPE-AEG------TKGSSYNIPEKGFSELLNSKLMKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRS*SSWVMRVELGNNKKAQNLENGLPFPSSRSSPTLVDDEFEAGNGR----*DEYXIAMXMIEKLLN 678
            MVQ+KKF GV QR WGSWV+EIRHPLL   +WLGTFET            VLM+G+NAKTNFP+   N  E +EG      +   S +      S +L++KL KCCK  SPSLTCLRLD  +SHIGVWQKRAGS+S SSWVM VELG    +Q   +     +S+ +      E E G  R     +E  +A+ MIE+LLN
Sbjct:    1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTS----KASQDAILAPTTEVEIGGSREEVLDEEEKVALQMIEELLN 197          
BLAST of EY649805 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.764e-13
Identity = 45/94 (47.87%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  121 KKFIGVMQRQWGSWVSEIRHPLLNMMVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLMKC 402
            ++F GV QR WGSWVSEIRHPLL   +WLGTFET             LM G  A+TNFP     NP A  T  S      K  S  L +KL KC
Sbjct:    6 QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY----NPNAIPTSSS------KLLSATLTAKLHKC 89          
The following BLAST results are available for this feature:
BLAST of EY649805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SHN2_ARATH4.915e-4853.93Ethylene-responsive transcription factor SHINE 2 O... [more]
SHN3_ARATH1.636e-4351.55Ethylene-responsive transcription factor SHINE 3 O... [more]
WIN1_ARATH5.263e-4249.25Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF03_ARATH1.764e-1347.87Ethylene-responsive transcription factor ERF003 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-G02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649805 ID=EY649805; Name=EY649805; organism=Citrus sinensis; type=EST; length=957bp
CGGNATTCCAAGGCCCGACCCACGCGTCCGCCCACGCGTTTTAATCAGGC
ATATTTATGATCCCCTCCAAGTGCAATAACAATAGCCCAGTTATCTAATT
CCACCAACATGGTACAATCAAAGAAGTTCATAGGCGTCATGCAACGCCAG
TGGGGCTCTTGGGTGTCCGAAATTCGCCACCCATTACTGAATATGATGGT
GTGGCTTGGAACATTTGAGACGGCTGAGGCAGCGGCAAGAGCTTATGATC
AAGCAGCCGTCTTGATGAATGGCCAAAATGCCAAGACTAATTTTCCAATC
CTGAAGCCCAATAATCCTGAAGCTGAAGGCACCAAGGGTAGTAGTTACAA
TATTCCTGAGAAGGGGTTTTCGGAACTCCTAAACTCGAAGCTTATGAAGT
GTTGCAAAGATTTATCGCCTTCGCTCACTTGCTTGAGGCTCGACAACGAT
AATTCTCATATCGGGGTCTGGCAGAAGCGAGCAGGATCTCGTTCATGATC
CAGTTGGGTCATGAGAGTTGAGCTGGGAAATAACAAAAAGGCGCAGAATT
TGGAGAATGGATTGCCATTTCCGTCGTCAAGGTCGTCCCCGACGTTGGTT
GATGATGAATTTGAAGCCGGGAATGGAAGATAGGATGAATATANGATTGC
AATGCANATGATTGAAAAGCTACTAAATTGGGATTGGCCCCATTTCTTCT
CCCTNCAGTGAGATCTAATAGAACTACTACAATACAACACTGGTTNGGAA
TAAAGTTCTCCTCCTTACCGGAGATAATTTACCTAAAAATTACAAGCTTT
TCGGAAAGGGGAAAAACCATATGTGAGAACGATTTTACAAATAACCGGGG
GGTTGGATTCCATGGGGCACAAAAAAACGACCTTGCCCAATGATCCACTC
CCCCATTAACGGGTTCTACTAATATCTCTCCAGATTAATTAGAAAAAATC
CTCGACT
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