EY649799

Overview
NameEY649799
Unique NameEY649799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7325 contig Csv1_Contig7325:24..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY649799 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.500e-77
Identity = 148/218 (67.89%), Postives = 173/218 (79.36%), Query Frame = 3
Query:   42 MASMALKSFTGLRQSPQEQQHPHFIAQALPRQQ---KFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAENNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVXEKRTLDVDAVIGADGANXQSAK 686
            MAS+ALK+FTGLRQS  E  +   ++++LP  Q   + R++A+K+SP++  RNLRV             ETLA+ G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA   GASV+NGLF+KMD+P+    PYVL+YT YD    G  EKRTL+VDAVIGADGAN + AK
Sbjct:    1 MASIALKTFTGLRQSSPEN-NSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAK 217          
BLAST of EY649799 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.601e-75
Identity = 145/219 (66.21%), Postives = 172/219 (78.54%), Query Frame = 3
Query:   48 SMALKSFTGLRQSPQEQQHPHFIAQ-----ALP-RQQKFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAENNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVXEKRTLDVDAVIGADGANXQSAK 686
            ++ LKSFTGLRQS  EQ +  F++      +LP R+   RV+AA+ +PKL+NR LRV             ETLAQ G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMKMISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAE +GA+VINGLF+KMD P N++ PY L+YTEYDG  G    K+T++VDAVIGADGAN + AK
Sbjct:    4 TVTLKSFTGLRQSSTEQTN--FVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAK 220          
BLAST of EY649799 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.362e-58
Identity = 117/187 (62.57%), Postives = 135/187 (72.19%), Query Frame = 3
Query:  132 RQQKFRVSAAKTSPKL-TNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAENNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-XEKRTLDVDAVIGADGANXQSAK 686
            R  +    AA +SPKL + R LRV             E LA+ GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMKMISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD + G    EKRT +VDA++GADGAN + AK
Sbjct:   30 RMARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAK 216          
BLAST of EY649799 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 94/149 (63.09%), Postives = 109/149 (73.15%), Query Frame = 3
Query:  240 ETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAENNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVXEKRTLDVDAVIGADGANXQSAK 686
            E L + G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMKMISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAE  G  VING   K+D+P     PY L+Y ++    G   E + L VD VIGADGAN + AK
Sbjct:   19 EILVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRIAK 166          
BLAST of EY649799 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  246 LAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAENNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVXEKRTLDVDAVIGADGANXQ 677
            +A+ G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  +MISP+   VDI     P E  ++GMV RE  D +LRERA   GA  + G +++++  R+  +  V++  +  G      E+   +   VIGADGAN Q
Sbjct:   21 MARAGLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE--RDSGKTVVVWRDKVTG------EEMKAETRVVIGADGANSQ 152          
The following BLAST results are available for this feature:
BLAST of EY649799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC6.500e-7767.89Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH1.601e-7566.21Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ1.362e-5862.57Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.196e-4663.09Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA1.207e-1436.30Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649799 ID=EY649799; Name=EY649799; organism=Citrus sinensis; type=EST; length=687bp
CCCGCGGTGCTCCACACTCACCCCTGACTGAAGCTCCCACAATGGCATCA
ATGGCTCTCAAATCCTTCACTGGCCTCCGCCAATCACCGCAAGAACAACA
GCACCCCCACTTCATCGCTCAAGCCCTCCCACGTCAGCAAAAATTCCGAG
TCTCCGCGGCAAAAACCAGTCCAAAACTCACCAACCGCAACCTCCGAGTG
GCGGTCATCGGGGGCGGCCCAGCAGGCGGAGCTGCCGCCGAGACGCTCGC
ACAAAATGGCGTCGAAACGTTCCTGATCGAGCGTAAGCTCGACAACTGCA
AGCCCTGCGGCGGGGCCATCCCTCTCTGCATGGTGGGGGAGTTTGACCTG
CCGCTGGACATAATCGACCGGAAGGTGACGAAGATGAAGATGATATCGCC
GTCGAACGTGGCGGTGGACATCGGGCAGACGCTGAAGCCGCACGAGTATA
TCGGGATGGTGAGGCGGGAGGTTCTGGACGCGTATTTGAGGGAGAGGGCG
GAGAATAACGGGGCGAGCGTGATTAACGGGTTATTCATGAAGATGGATTT
GCCGAGGAACTTTGAGCAGCCGTACGTTTTGTATTATACGGAGTACGATG
GGACAAAGGGCGGCGTCNGTGAGAAGAGGACGCTGGATGTTGATGCTGTT
ATCGGAGCTGATGGTGCTAACTNNCAGAGTGCCAAGT
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