EY649792

Overview
NameEY649792
Unique NameEY649792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.309e-25
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  272 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSE 751
            +  +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  + I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E  F  N            D +++     S   R+V V SE
Sbjct:  107 YDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRR-----SSPARVVVVSSE 261          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.145e-24
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  272 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSE 751
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+AM LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N            D + ++A       R++ V SE
Sbjct:  107 YDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSE 261          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.150e-24
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  272 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSE 751
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+A+ LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N            D + ++A       R++ V SE
Sbjct:  107 YDGSTTALEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSE 261          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.899e-23
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  272 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSE 751
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RN++   +    I++E   AKV+AM LD++ L SV+ FA  + ++   L++L+ NAG  A P+ L+KD +E  F  N            D + +     S   R++ V SE
Sbjct:  107 YDGSTTAMEILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCR-----SSPARVIVVSSE 261          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.044e-19
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  263 PSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF 640
            P  +  ++ A E+  G D +    IVTGA+SGIG ETAR  AL G HVI+A RN +        I+ E   A+V+ + LD++SL SVR+FA  + +   PL++L+ NA + + P+ L++D  E  F
Sbjct:  101 PKRYDGNTGALEILHGQDLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTF 226          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  323 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXS 748
            G T IVTGA++GIG +TA  LA RG ++I+A R+M    AA KD+R     E  +  V+A  LD++SL S+R+FA++   +   ++ILINNAG+M  P   ++D  E+QF  N            D +     K+S   RI+N+ S
Sbjct:   38 GKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRG----ETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKL-----KASAPSRIINLSS 174          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 59/172 (34.30%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  332 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSELIVLLIVKEFVLTKS**VSVQQFGAYGQSKLA 847
            AIVTG + GIG  TA+ LA  G+HVI+A  N +  K V   I +E  + KV+ +  D++S+ S+R+F  ++  +  PL++LINNAG+M  P   ++D  E  F  N            DT+K++        R+V V S    +  +    L  S         AY QSKLA
Sbjct:   46 AIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESG-SPGHSARVVTVSSATHYVAELNMDDLQSS--ACYSPHAAYAQSKLA 214          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: YJCD_SCHPO (Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe GN=SPCC736.13 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.388e-17
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  314 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREG--RIVNVXS 748
            D TG  A+VTG+S GIG  TA  LA +G  V +A RN    + V + I  E+  +K+  + LD+    SV + A  + ++   L+IL+NNAGIM  PF L+KD  ELQ  TN             T+++TA++  R G  RIV+V S
Sbjct:   39 DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLLPTLRRTAEE-CRPGDVRIVHVAS 184          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.260e-16
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  302 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXS 748
            T  +   G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E  F  N            + +K++A       R+VN+ S
Sbjct:   32 TTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSS 175          
BLAST of EY649792 vs. ExPASy Swiss-Prot
Match: DHRSX_MOUSE (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  323 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVXSELIVLLIVKEFVLTKS**VSVQQFGAYGQSKLA 847
            G  AIVTGA++GIG  TAR LA  G+ V++A  +   G++V  +I  E+ S +   + LD++SLASVR FA ++ + G PL++L+NNAG+M  P   ++D  E     N              ++ +  +  R  R+V V S    +  V    L      +   + AY QSKLA
Sbjct:   43 GRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLLLLPALRASGAE-GRGSRVVTVGSATHYVGTVDMADLHGR--HAYSPYAAYAQSKLA 214          
The following BLAST results are available for this feature:
BLAST of EY649792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
WWOX_CHICK3.309e-2541.25WW domain-containing oxidoreductase OS=Gallus gall... [more]
WWOX_HUMAN2.145e-2440.00WW domain-containing oxidoreductase OS=Homo sapien... [more]
WWOX_PONAB8.150e-2439.38WW domain-containing oxidoreductase OS=Pongo abeli... [more]
WWOX_MOUSE6.899e-2338.75WW domain-containing oxidoreductase OS=Mus musculu... [more]
WWOX_DANRE6.044e-1939.68WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH13_HUMAN2.539e-1739.04Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
DHRSX_HUMAN3.316e-1734.30Dehydrogenase/reductase SDR family member on chrom... [more]
YJCD_SCHPO7.388e-1739.46Uncharacterized oxidoreductase C736.13 OS=Schizosa... [more]
RDH12_MOUSE1.260e-1632.89Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
DHRSX_MOUSE1.646e-1634.29Dehydrogenase/reductase SDR family member on chrom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649792 ID=EY649792; Name=EY649792; organism=Citrus sinensis; type=EST; length=939bp
CCCACGCGTTCGCAACAACGCGATACGAATCTAGCAAGATTGCAGTCACA
CAACCTTCACCGGTCGGTGAATGACTACACGGCTTCCTAAACGGCTAATA
CGTATCAACTGTCGTTGCCCTTCATTCTTGATCGTAACTCATAAGAAGCC
CGTAACGCTGTAACAACCGTAACTTTGTTTGTGCGAGCTAAAAAAAAAGA
AAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAACATGTGGCTGTTT
AGCAGAAAAGGGCCATCTGGGTTCTCGGCTTCCTCAACAGCTGAGGAAGT
TACTCAAGGAATTGATGGCACTGGCCTCACAGCCATTGTCACAGGAGCAT
CAAGTGGTATTGGCACTGAAACTGCACGTGTCCTTGCCTTGCGTGGTGTC
CATGTGATTATGGCGGTCAGGAATATGGCTGCTGGTAAAGATGTTAGAGA
GGCAATAGTCAAGGAAATCCCCTCTGCTAAAGTTGATGCCATGGAGTTGG
ATGTCAGTTCCTTGGCATCTGTGAGAAAATTTGCTTCAGAATATAATAGC
CAGGGTCGTCCACTGAATATCCTAATAAACAATGCAGGAATAATGGCAAG
CCCATTCATGCTATCGAAAGACAACATAGAACTACAGTTTGCAACAAATC
ACTTGGGTCATTTTCTGCTGACTCATCTTTTATTGGACACCATGAAGAAG
ACAGCGCAAAAGAGTAGCAGGGAAGGAAGAATTGTGAATGTCTNCTCAGA
GCTCATCGTTTTGCTTATAGTGAAGGAATTCGTTTTGACAAAATCATGAT
GAGTCAGCGTCCAACAGTTTGGTGCGTATGGCCAATCGAAGCTTGCCACA
TTTTGCATGCTAAAGAGCTGCAAACATTTGAAGGAGATGGAGTGACATAC
TGCGAATCACTCATNCAGNATCAATGTCACCAATCTTTC
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