EY649788

Overview
NameEY649788
Unique NameEY649788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY649788 vs. ExPASy Swiss-Prot
Match: SUV3_MOUSE (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus GN=Supv3l1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 
Query:    3 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 311
            +PL L  +Y+FC +P++         L QFA  YS+   +    +  +    L  PK    L +LE++H V DLY+WLS+R  + FPD  L  S +     +I+E
Sbjct:  564 IPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFIDMFPDSSLVRSLQKELDAIIQE 668
[Close]
BLAST of EY649788 vs. ExPASy Swiss-Prot
Match: SUV3_RAT (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus GN=Supv3l1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 3 
Query:    3 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEE 311
            +PL L  +Y+FC +P++         L QFA  YS+   +    +  +    L  PK    L +LE++H V DLY+WLS+R  + FPD     S +    ++I+E
Sbjct:  564 IPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFIDMFPDSSFVRSLQKELDVIIQE 668
The following BLAST results are available for this feature:
BLAST of EY649788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SUV3_MOUSE5.162e-1133.33ATP-dependent RNA helicase SUPV3L1, mitochondrial ... [more]
SUV3_RAT8.805e-1132.38ATP-dependent RNA helicase SUPV3L1, mitochondrial ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E07-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649788 ID=EY649788; Name=EY649788; organism=Citrus sinensis; type=EST; length=493bp
AGTTGCCCCTTCGGTTGCATGAAAAGTACCTTTTCTGTATCAGTCCAGTT
GATATGAATGACGACATTTCATCTCAGGGACTCACACAGTTTGCAACAAA
TTATTCAAAGAAAGGGATTGTCCAGCTTCGAGAAATATTTACACCAGGTA
CACTTCAGGTGCCAAAAACACAGGCTGCACTTAGGGAGCTTGAATCTATT
CACAAGGTCTTGGATCTCTACGTGTGGCTGAGTTTCCGGTTGGAAGAATC
GTTCCCGGATCGTGAGCTGGCAGCTTCACAGAAGGCTATCTGCAGCATGT
TGATTGAGGAATTTCTCGAGAGGCTCGGGTGGCAGAAGCCGAGGGTAAAG
AAAGTAACGCCACGACCTAAATTAAACTCTGCTGTTGTCTCGAGATGTTA
AACAATATCTATGAGATAATATTTTTTGCTAAATGTCAGATGATATTATC
AATATAATTTTATTTTTAGTCAAATAAAAAAAAAAAAAAAAAA
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