EY649783

Overview
NameEY649783
Unique NameEY649783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.434e-41
Identity = 85/147 (57.82%), Postives = 109/147 (74.15%), Query Frame = 1
Query:  142 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDEKCIGD 564
            MKGGKSK++++ A  KL+VN                   DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+ +AVGKA G KWK+MS+A+KAPYVAK+E RKVEYEK+M+ YN++QAEG    +E ESEKS+S+ NDEDDDE+  G+
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGE 147          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.748e-35
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 1
Query:  142 MKGGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDEKCIGD 564
            MKGGKSK+ + N KL+V                DPNKPKRP SAFFVFME+FR+ YK+ HP NKS A VGKAGG+KWK ++ A+KAP+++KAE RK EYEK+++ YN++QA G    EE ES+KS S+ ND+D+D+   G+
Sbjct:    1 MKGGKSKAKSDN-KLAVKKQAADTKKTKKAVK-DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEEEESDKSRSEVNDDDEDQDGSGE 137          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.605e-33
Identity = 79/144 (54.86%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  142 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDEK 552
            MKGGKSK +++ A  KL+VN                    DPNKPKRP SAFFVFM +FREQYKKDHP NKS AAVGKA GE+WKS+SE +KAPYV +A  +K EYE  ++ YN++  EG   D+E  S+KS S+ NDED+DE+
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK-LEG--KDDEEGSDKSKSEVNDEDEDEE 141          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.432e-31
Identity = 74/147 (50.34%), Postives = 96/147 (65.31%), Query Frame = 1
Query:  142 MKGGKSKSDTR-NAKLSVNXXXXXXXXXXXXXXX--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQ--------AEGTNPDEEYESEKSMSDANDEDDDE 549
            MKG KSK   + +AKL+V                  DPNKPKR  SAFFVFMEEFR+++K+ +PKNKS AAVGKA G++WKS+SE+DKAPYVAKA   K+EY K +  YN+ +        A+    ++E ES+KS S+ NDEDD+E
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEE 147          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.024e-29
Identity = 74/151 (49.01%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  142 MKGGKSKSDTR-NAKLSVNXXXXXXXXXXXXXXX---DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQ-----------AEGTNPDEEYESEKSMSDANDEDDDE 549
            MKG KSK   + +AKL+V                   DPNKPKR  SAFFVFM EFRE++K+ +PKNKS AAVGKA GE+WKS+SE++KAPYVAKA   K EY K +  YN+ +           A+    ++E ES+KS S+ ND+DDDE
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDE 151          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.450e-15
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  241 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNY-NRRQAEGTNPDEEYESEKSMSDANDEDDDEK 552
            DPN PKRP+SAFF+F  +FR Q K + P   S   V K  GEKW +++  DK PY  KA   K +YEKD+  Y N+ +   + P +     K   D +D+DDD++
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDDE 193          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.309e-15
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  241 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRR-----------QAEGTNPDEEYESEKSMSDANDEDDDEK 552
            DPN PKRP SAFF+F  EFR + K  +P   S   V K  GE W ++S+ +K PY  KA   K +YEKD+ +Y  +           +A     +EE E E+   +  DEDDD++
Sbjct:   89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDEDDDDE 202          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  241 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDE 549
            DPN PKRP SAFF+F  E+R + K +HP   S   V K  GE W + +  DK PY  KA   K +YEKD+  Y  +           ++EKS     +EDD+E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEE 192          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  241 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDE 549
            DPN PKRP SAFF+F  E+R + K +HP   S   V K  GE W + +  DK PY  KA   K +YEKD+  Y  +           ++EKS     +EDD+E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEE 192          
BLAST of EY649783 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  241 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSFAAVGKAGGEKWKSMSEADKAPYVAKAENRKVEYEKDMKNYNRRQAEGTNPDEEYESEKSMSDANDEDDDE 549
            DPN PKRP SAFF+F  E+R + K +HP   S   V K  GE W + +  DK PY  KA   K +YEKD+  Y  +           ++EKS     +EDD+E
Sbjct:   56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEE 157          
The following BLAST results are available for this feature:
BLAST of EY649783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
HMGL_SOYBN4.434e-4157.82HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI4.748e-3553.90HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA2.605e-3354.86HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE5.432e-3150.34DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.024e-2949.01HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGT_ONCMY2.450e-1541.90High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB3_CHICK9.309e-1539.13High mobility group protein B3 OS=Gallus gallus GN... [more]
HMGB1_RAT2.709e-1440.78High mobility group protein B1 OS=Rattus norvegicu... [more]
HMGB1_MOUSE2.709e-1440.78High mobility group protein B1 OS=Mus musculus GN=... [more]
HMGB1_CRIGR2.709e-1440.78High mobility group protein B1 (Fragment) OS=Crice... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649783 ID=EY649783; Name=EY649783; organism=Citrus sinensis; type=EST; length=956bp
ACCTGNTCCGGNATTTCCAGGTCGNCCCACTCGTCCGATCCGCTATTTAT
ATCTGCGTCTCTCTGGGGGGGGTGTCTCCTCTTTTTCTCTCATTTGAAGC
CCTAACCCTAGCTCTATCTTTCTTCATAAACAGGATTTGAAATGAAAGGA
GGTAAATCAAAGTCAGACACCAGAAACGCCAAGCTCTCTGTGAACAAGAA
GCCTGCCAAAGCTGGACGAAAATCGGGAAAGGCGGCTAAGGACCCGAACA
AGCCAAAGAGGCCAGCCAGCGCCTTCTTTGTTTTCATGGAAGAATTCCGT
GAACAATACAAGAAGGATCATCCTAAGAACAAATCATTTGCTGCTGTTGG
TAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGATAAAGCAC
CGTATGTTGCTAAGGCAGAGAATCGCAAGGTTGAGTATGAGAAGGATATG
AAAAACTACAATAGGAGACAGGCGGAGGGAACTAATCCGGATGAAGAATA
TGAGTCTGAGAAGTCTATGTCAGATGCGAATGATGAGGATGATGATGAAA
AATGCATTGGCGATGGTTTTTTTGGGGATGTTTTGATTTTTATTTTGACT
TGTATCATTGGTATGGGGGTTTTCTGAAATGGTTTGTTGTATATTGGTTT
GGGGTTGGGCATGGAGTTATTATTAATATAAATTGACGAATAAATTACAT
ACCACTGTAGGGCTGTGACAATGTTTAAAAACCATTTGTAATGCCTTGGC
CTCCATTTGAATGTTTGGGATGCTTCTTATTCTCAAATGTATTGAAAAAT
TATGTTGCGTTCTCCTTAACATGTCTATGCCTGCCTTTCAAAAATCAATG
CGTGGGGGGGGAAATTACCGCGTTTATGTACTCGGTGTAAATCTGATGAG
TTACTTAGCGGTCATTCGTGGAGGAAATACCTTTTTTTTAAAATTTCTAT
TAAATC
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