EY649740

Overview
NameEY649740
Unique NameEY649740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649740_ssr303 microsatellite EY649740_ssr303:303..326. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.704e-42
Identity = 100/174 (57.47%), Postives = 116/174 (66.67%), Query Frame = 2
Query:  386 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASL-----IY**YXG**FX*VAASV------WD*F*EEYEKGIDWNRFGELFESSGIV*ME-LSVGHRS*GLEFGYLL 871
            D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV  FK  ND NY+TL +NVD+LKLIQ+GLTFSDENGNLPTCGT +FCIWQF F        IY           + S+         F +  EKGID  RFGEL  SSGIV  + +S      G +FGYL+
Sbjct:    8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIY----------ASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLV 171          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.873e-38
Identity = 95/167 (56.89%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  386 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGT-XQFCIWQFTFA--SLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*MELS--VGHRS*GLEFGYLL 871
            D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK   +Y+Y+TL  NV++LK+IQLGLTFSDE GNLPTCGT  ++CIWQF F    L    Y       +  S  D F +  E GID  RF EL  SSGIV  E    V   S G +FGYLL
Sbjct:    8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGID-FVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHS-GYDFGYLL 172          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.972e-37
Identity = 92/176 (52.27%), Postives = 112/176 (63.64%), Query Frame = 2
Query:  386 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFA------------SLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*MELS--VGHRS*GLEFGYLL 871
            D IQIREVWNDNL+EE  LIR++VD + Y+AMDTEFPG+V+RPVG FK+  DY+Y+TL  NV++LK+IQLGLTFS+E GNLPTCGT ++CIWQF F             S+      G     +A +  D        GID  RF EL  SSGIV  E    V   S G +FGYLL
Sbjct:    8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSG---IDLAKNTLD--------GIDSKRFAELLMSSGIVLNENVHWVTFHS-GYDFGYLL 171          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.954e-31
Identity = 83/171 (48.54%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  386 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFA--SLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME-LSVGHRS*GLEFGYLL 871
            D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A  N N      +YNY TL  NV+MLKLIQLGLT SDE GNLPTCGT + CIWQF F   ++I   +       +  S  D   +  E G+D  RF EL   SG+V  + +       G +FGYLL
Sbjct:   12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAID-LEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLL 181          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.270e-24
Identity = 72/163 (44.17%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  395 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME----LSVGHRS*GLEFGYLL 871
            +I EVW  NL+++   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L  NVD+LK+IQLGLTF +E G  P  GT     WQF F   +           +  S    F +  E+GI+   F ELF +SG+V  E    LS      G +FGYL+
Sbjct:   11 RICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GT---STWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHS---GYDFGYLI 166          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.270e-24
Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  398 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFA-SLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME--LSVGHRS*GLEFGYLLSGDLPGYPIPTGF 910
            IR+VW+ NL++E  LI  ++++Y  ++MDTEFPGVV RP+G FK+ +DY+YQTL  NVD LK+IQ+GL  SDE GN P     + C WQF F  +L    Y       +  S  D F +  E GI+   F EL   SG+V  E    +   S G +F YLL   +   P+P  +
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNFTFNLQDDMYAPESIELLTKSGID-FKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKA-MTQIPLPAEY 188          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.659e-24
Identity = 72/163 (44.17%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  395 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME----LSVGHRS*GLEFGYLL 871
            +I EVW  NL+++   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L  NVD+LK+IQLGLTF +E G  P  GT     WQF F   +           +  S    F +  E+GI+   F ELF +SG+V  E    LS      G +FGYL+
Sbjct:   11 RICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPP-GT---STWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHS---GYDFGYLI 166          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.167e-24
Identity = 73/162 (45.06%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  398 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME----LSVGHRS*GLEFGYLL 871
            I EVW  NLEEE   IREIV  Y+YIAMDTEFPGVV+RP+G F++  DY YQ L  NVD+LK+IQLGLTF++E G  P+        WQF F   +           + A+    F +  E+GID   F EL  +SG+V  +    LS      G +FGY++
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHS---GYDFGYMV 166          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.167e-24
Identity = 73/162 (45.06%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  398 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME----LSVGHRS*GLEFGYLL 871
            I EVW  NLEEE   IREIV  Y+YIAMDTEFPGVV+RP+G F++  DY YQ L  NVD+LK+IQLGLTF++E G  P+        WQF F   +           + A+    F +  E+GID   F EL  +SG+V  +    LS      G +FGY++
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS----GINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHS---GYDFGYMV 166          
BLAST of EY649740 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.830e-24
Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  395 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLNDNVDMLKLIQLGLTFSDENGNLPTCGTXQFCIWQFTFASLIY**YXG**FX*VAASVWD*F*EEYEKGIDWNRFGELFESSGIV*ME----LSVGHRS*GLEFGYLL 871
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L  NVD+LK+IQLGLTF +E G  P  GT     WQF F   +           +  +    F +  E+GI+   F EL  +SG+V  E    LS      G +FGYL+
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GT---STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS---GYDFGYLI 166          
The following BLAST results are available for this feature:
BLAST of EY649740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAF1J_ARATH6.704e-4257.47Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1G_ARATH5.873e-3856.89Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH4.972e-3752.27Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH6.954e-3148.54Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_XENLA1.270e-2444.17CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CAF1_SCHPO1.270e-2441.95Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_XENTR1.659e-2444.17CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT8_MOUSE2.167e-2445.06CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN2.167e-2445.06CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_MOUSE2.830e-2444.17CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-A02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649740 ID=EY649740; Name=EY649740; organism=Citrus sinensis; type=EST; length=943bp
CATCTCTACTTCTAACGCCCCCAGGCAAGGCAACGGATTCAAAACAAAAC
CCTCGGGATATCTTCTCTTCTCTCTCCTCTCGCAATTCGTTGACCTCAAA
ATTTTTCTTCGAAAGAACACGAAATCACTCAAGATCTGTTCGCTTCGAGT
TTTAATTTCATCAATCCAAGATCTGTTGAGAAGTGTTGAAACGGTGACGT
TTCTTCCAGCGGAGAGAACCCAGTTCAGGTTTTTGAGGTTTCGAGTTACT
TATGATCTGTTTACGGATCTGGGCGTTTTAGTGTCTATCTTGTTGGTTGG
TATTGTTGTTGTTGTTGTTGTTGTTGTGTTCAGTTTAGGTTTAAAATTTG
CTGTCTTGGAAATGTCGGTTTTGCCTAAGGGGGGCGATGAAATTCAAATT
CGAGAGGTGTGGAATGATAATCTCGAAGAGGAATTTGCTTTAATTCGTGA
AATTGTTGATAAGTATAACTATATAGCCATGGATACGGAGTTCCCAGGCG
TGGTTTTGCGTCCCGTGGGAGCTTTTAAGAATATTAATGATTATAACTAC
CAAACGTTGAATGATAACGTCGACATGTTGAAGTTGATTCAATTGGGTTT
AACATTTTCCGATGAAAATGGGAATTTGCCTACTTGTGGGACTGANCAGT
TTTGCATTTGGCAATTCACTTTCGCGAGTTTAATTTATTGATGATATTNT
GGCTAGTGATTCAANTGAGTTGCTGCATCAGTGTGGGATTGATTTTAAGA
AGAATATGAGAAGGGTATTGATTGGAACCGCTTTGGGGAGCTTTTTGAGT
CCTCGGGAATTGTTTGAATGGAGTTGTCCGTGGGGCACCGTTCATAAGGG
CTTGAATTTGGGTATCTGCTTAGTGGTGACTTGCCGGGTTACCCGATCCC
AACCGGATTCTTGATTGATCATTGGATTTCCTGAGATTATGAA
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