EY649716

Overview
NameEY649716
Unique NameEY649716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649716_ssr638 microsatellite EY649716_ssr638:638..649. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.061e-39
Identity = 84/147 (57.14%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  113 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEECSGE 535
            MKGGKSK++++ A  KL+VN                   DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG               VNDEDDDEE SGE
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGE 147          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.356e-33
Identity = 74/141 (52.48%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  113 MKGGKSKSDTRNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEECSGE 535
            MKGGKSK+ + N KL+V                DPNKPKRP SAFFVFME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G               VND+D+D++ SGE
Sbjct:    1 MKGGKSKAKSDN-KLAVKKQAADTKKTKKAVK-DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEEEESDKSRSEVNDDDEDQDGSGE 137          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.186e-30
Identity = 77/144 (53.47%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  113 MKGGKSKSDTRNA--KLSVNXXXXXXXXXXXXXXX-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            MKGGKSK +++ A  KL+VN                    DPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++  EG               VNDED+DEE
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK-LEG--KDDEEGSDKSKSEVNDEDEDEE 141          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.196e-28
Identity = 71/147 (48.30%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  113 MKGGKSKSDTR-NAKLSVNXXXXXXXXXXXXXXX--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK--------PXXXXXXXXXXXXVNDEDDDE 520
            MKG KSK   + +AKL+V                  DPNKPKR  SAFFVFMEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K                     VNDEDD+E
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEE 147          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.315e-26
Identity = 70/151 (46.36%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  113 MKGGKSKSDTR-NAKLSVNXXXXXXXXXXXXXXX---DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ-----------AEGTKPXXXXXXXXXXXXVNDEDDDE 520
            MKG KSK   + +AKL+V                   DPNKPKR  SAFFVFM EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ +           A+  +             +ND+DDDE
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDE 151          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP+SAFF+F  +FR Q K + P   S+  V K  GEKW +++  DK PY  KA + K +YEKD+  Y N+ +   + P             +D+DDD+E
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDDE 193          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.009e-13
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PYV KA K K +YEKD+ +Y ++ + +G K               +E+++EE
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEE 192          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.009e-13
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++++++K PY+ KA K K +YEKD+ +Y   +++G               V +ED++EE
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY---KSKGKFDGAKGPAKVARKKVEEEDEEEE 188          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y ++ + +G K             V +ED++EE
Sbjct:   89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAK---GAATKAARKKVEEEDEEEE 189          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+++K PY+ KA K K +YEKD+ +Y   +++G               V +ED+++E
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY---KSKGKFDGAKGAAKVARKKVEEEDEEDE 188          
The following BLAST results are available for this feature:
BLAST of EY649716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HMGL_SOYBN9.061e-3957.14HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI4.356e-3352.48HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA1.186e-3053.47HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE7.196e-2848.30DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT2.315e-2646.36HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGT_ONCMY6.986e-1540.95High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB3_MOUSE1.009e-1339.05High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_HUMAN1.009e-1338.46High mobility group protein B3 OS=Homo sapiens GN=... [more]
HMGB3_CHICK2.247e-1340.95High mobility group protein B3 OS=Gallus gallus GN... [more]
HMGB3_BOVIN2.247e-1338.46High mobility group protein B3 OS=Bos taurus GN=HM... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-G01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649716 ID=EY649716; Name=EY649716; organism=Citrus sinensis; type=EST; length=945bp
CCACGCGTCCGCCGCTATTCACATCTGCGTCTCTCTCTTTTTCTCTTTCC
TCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTATCTTTCTTCAGAA
ACAGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGACACCAGAAACGC
CAAGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGAA
AGGCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTT
GTTTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGAA
CAAATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAA
TGTCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAG
GTTGAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGGG
AACTAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGA
ATGATGAGGATGATGATGAAGAATGCAGTGGCGAGGTTTTTTTTGGGGAT
GTTTTGATTNTTAGTTTGACTTGTTATCATTGTTATGTGGTTCTTCTTGA
ATTTGTTTGTTGATTTATTGTTTTTGGTTCTGTGCAGGATGATGATGATG
AATANAAAGTGAAGGAAGAATATAGCATAGTCATGGTAGGCTGTGANCAT
GTTTCAAACACATATGNTAATGCTTTGTGCCTTCATGTTAATTTTTTTGG
GATGCTTTCATCATCTTCATCATCATGGTAGAAAATCATGGGTGCTCTCC
CTCGACATTTTCTTATGCCTGCCTTTCAAGAATAATAGCTGGAGGTGGGA
GATCACTGCTCTTTTGTACTGGGTCTAAAGCTATGATTANCTAAGCGTCC
ATCGTTGGAGAAAATCCATGTTTTTGAGATGATGGGGGGGAAGGG
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