FC922145

Overview
NameFC922145
Unique NameFC922145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.126e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.126e-52
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.509e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.300e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.596e-49
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.643e-45
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.643e-45
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of FC922145 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.643e-45
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 2 
Query:    2 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 316
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of FC922145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS132_ARATH1.126e-5299.0540S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH1.126e-5299.0540S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN2.509e-5298.1040S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA7.300e-5298.1040S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ1.988e-4993.3340S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ1.988e-4993.3340S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_MAIZE2.596e-4993.3340S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS13_XENLA8.643e-4582.8640S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT8.643e-4582.8640S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE8.643e-4582.8640S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CC07RM1 SLH Citrus sinensis cDNA clone KN0AAM3CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922145 ID=FC922145; Name=FC922145; organism=Citrus sinensis; type=EST; length=689bp
ACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAG
TGAAGAGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGG
CTTGCTCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGT
CGCTATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGT
TTAGGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTAC
AAGAAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGC
CAGCACTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACT
TCCAGGATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATT
GTTATTCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATT
AGGGCGGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCT
CTGGATCCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAG
ATGCATAATGTTCTCGTTCTAGTGTGGGAATTTCTATGGACGCCATTGAC
AGGGTTTGGTTTTGCATGACCTTTCTCTGTTGGTTGGATTTTTTAAAATG
GTGCTTTTGTTACAGTTGCTCTTTGGTAATCCATGATGC
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