EY649696

Overview
NameEY649696
Unique NameEY649696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649696_ssr1 microsatellite EY649696_ssr1:1..18. BLAST: Citrus ESTs to Prunus persica proteins V1
EY649696_ssr17 microsatellite EY649696_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649696 vs. ExPASy Swiss-Prot
Match: MRP_SYNY3 (Protein mrp homolog OS=Synechocystis sp. (strain PCC 6803) GN=mrp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.292e-15
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  271 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMVNDTIIIVLIKK*RVFGMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPE--GLQKISNIVAVSSCKGCVXKSTVAVNLAYTLXXMGA 696
            VL  L  + DP+    +V    ++D+ I  A G VSF L LTTPACP+++ + +                     + V  +P V KV V ++A+  +    + LP+   + ++ NI+A+SS KG V KSTVAVN+A  L   GA
Sbjct:    7 VLTVLRPVQDPELQKSLVELNMIRDVAI--AGGTVSFTLVLTTPACPLREFIVED------------------CEKAVKTLPGVEKVEVKVTAETPQQ---KSLPDRQSVGQVKNIIAISSGKGGVGKSTVAVNVAVALAQTGA 127          

HSP 2 Score: 31.187 bits (69), Expect = 6.292e-15
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  701 VGIFDADVYGPSLPTMV 751
            VG+ DAD+YGP+ PTM+
Sbjct:  129 VGLLDADIYGPNAPTML 145          
BLAST of EY649696 vs. ExPASy Swiss-Prot
Match: MRP_DEIRA (Protein mrp homolog OS=Deinococcus radiodurans GN=mrp PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.080e-13
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  271 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMVNDTIIIVLIKK*RVFGMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGCVXKSTVAVNLAYTLXXMGAR 699
            +L+ALS + DP+   D+VS G ++  +++  + +V  ++ LTTPACP+K                  G  E      +L +P V  V +   A     + A   P  L  + ++V V S KG V KS+VAVNLA +L   GAR
Sbjct:    5 LLRALSTVNDPELHRDLVSLGMIERAELSGDVAQV--KVNLTTPACPLK------------------GQIELDVRSALLQVPGVRDVQIEFGAM----VRAATQP-ALPGVKHVVLVGSGKGGVGKSSVAVNLAASLARDGAR 122          

HSP 2 Score: 29.6462 bits (65), Expect = 9.080e-13
Identity = 22/66 (33.33%), Postives = 31/66 (46.97%), Query Frame = 2
Query:  701 VGIFDADVYGPSLPTMVSPENRLLXMNPEERNXIPN*YLGVKL---------GVFWIFRGRXVHIA 871
            VG+ DADVYGPS+  M+      +  N E+R   P    GV+          G   ++RG  +H A
Sbjct:  123 VGLLDADVYGPSVAHMLGQGQARVTAN-EDRKMRPIEAHGVRFISMANLSPAGQALVWRGPMLHSA 187          
BLAST of EY649696 vs. ExPASy Swiss-Prot
Match: MRP_HELPJ (Protein mrp homolog OS=Helicobacter pylori J99 GN=mrp PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.703e-11
Identity = 40/147 (27.21%), Postives = 71/147 (48.30%), Query Frame = 1
Query:  262 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMVNDTIIIVLIKK*RVFGMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-ISNIVAVSSCKGCVXKSTVAVNLAYTLXXMGAR 699
            + DVL AL  II P+F  DIVS GFVK++ +++   ++   +E+ + +     ++ + I   + +K                    V  +N+ +   P +P   +   + L K I ++V +SS KG V KST +VNL+  L  +  +
Sbjct:    4 QEDVLNALKTIIYPNFEKDIVSFGFVKNITLHD--NQLGLLIEIPSSSEETSAILRENISKAMQEK-------------------GVKALNLDIKT-PPKPQAPKPTTKNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQK 128          

HSP 2 Score: 41.2022 bits (95), Expect = 2.703e-11
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  695 QGVGIFDADVYGPSLPTMVSPENRLLXMNPEERNXIPN*YLGVKL 829
            Q VG+ DADVYGP++P M+  +N  + M+P  +  IP    GV +
Sbjct:  127 QKVGLLDADVYGPNIPRMMGLQNADVIMDPSGKKLIPLKAFGVSV 171          
The following BLAST results are available for this feature:
BLAST of EY649696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MRP_SYNY36.292e-1534.03Protein mrp homolog OS=Synechocystis sp. (strain P... [more]
MRP_DEIRA9.080e-1332.87Protein mrp homolog OS=Deinococcus radiodurans GN=... [more]
MRP_HELPJ2.703e-1127.21Protein mrp homolog OS=Helicobacter pylori J99 GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-E03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649696 ID=EY649696; Name=EY649696; organism=Citrus sinensis; type=EST; length=920bp
CTCTCTCTCTCTCTCTCTATCTATCTATCTTAAAAGCAACTGCTTCATGC
TCCATGTTGGCCTCATCTCCCTTTTCAAGGCTGTAAATCACCATCAATAC
TTGCTTTAGTTCCACCGGACAGATTTCTTCAGTTATCAGCTATCAACTTC
TCTTTGCACCCCTCAAAGTTGGAAAAGTCCATTTGGGTATCACATAGACC
GTCCATTTTTGGCTGTGGCTCAACTAATGCTACTTCTGTTGAAGTATCTA
CTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTATTGAT
CCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGATATGCA
AATCAACGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCACAACTC
CAGCATGTCCAATCAAGGACATGGTAAATGACACAATCATCATTGTTTTG
ATCAAGAAGTGACGTGTGTTTGGAATGTTTGAGCAAAGGGCAAATGAGGT
GGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCAC
AACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAAA
ATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGATGTGTANGGAAATC
CACAGTAGCTGTAAATCTTGCTTACACTTTANCANGTATGGGTGCAAGGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTANAGATGAATCCCGAGGAGAGAAACATNA
TTCCAAACTGATACCTGGGAGTCAAGTTGGGTGTCTTTTGGATTTTCCGG
GGCAGGTNCGTGCATATTGCNAGGGTCCATGGTTTCTGGGGTCATCACCA
ACTTCTGACACAACTGAGTG
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