EY702814

Overview
NameEY702814
Unique NameEY702814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702814 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.624e-20
Identity = 64/191 (33.51%), Postives = 84/191 (43.98%), Query Frame = 2
Query:  284 HYVLASDWNKIDHMTDDMICLEFHPAHLRHMHNCFENYSRGRPCLQPCCSYGRNGL--HNYLPLWHSCITIP*SSLCMPYASTITG*NNLFYASSACIYPQSTPIVKLTLSLKEV*CLCR*SSPCL*PAEPPQMKRSVDTTPTT**FSDLIQHSPK*I-------------RPFCTFQSGKGTTPAAFCQK 811
            HYV+ASDW K +HMT+DM C EFH   LR M NC +               G  G    N+  + ++   I   S  M  A+ I G    FYASSACIYP+   +    +SLKE             PAE PQ    ++   T     +L +H  K                PF T++ G+   PAAFC+K
Sbjct:   52 HYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI---SFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW---------PAE-PQDAYGLEKLAT----EELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK 225          

HSP 2 Score: 39.2762 bits (90), Expect = 9.624e-20
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  142 YGAYTYKDLDREPYWPSY*APEYSVTGA 225
            YGAYTYK+L+RE YWPS    + S+TGA
Sbjct:    9 YGAYTYKELEREQYWPSE-NLKISITGA 35          
BLAST of EY702814 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.435e-18
Identity = 63/191 (32.98%), Postives = 86/191 (45.03%), Query Frame = 2
Query:  284 HYVLASDWNKIDHMTDDMICLEFHPAHLRHMHNCFENYSRGRPCLQPCCSYGRNGL--HNYLPLWHSCITIP*SSLCMPYASTITG*NNLFYASSACIYPQSTPIVKLTLSLKEV*CLCR*SSPCL*PAEPPQMKRSVDTTPTT**FSDLIQHSPK*I-------------RPFCTFQSGKGTTPAAFCQK 811
            HY++ASDW K +HMT+DM C EFH   LR M NC +  +            G  G    N+  + ++   I   S  M  A+ I G    FYASSACIYP+   + +  +SLKE             PAE PQ    ++   T     +L +H  K                PF T++ G+   PAAFC+K
Sbjct:   54 HYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI---SFNMLEAARINGVKRFFYASSACIYPEFKQL-ETNVSLKESDAW---------PAE-PQDAYGLEKLAT----EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK 226          

HSP 2 Score: 35.4242 bits (80), Expect = 6.435e-18
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  142 YGAYTYKDLDREPYWPSY*APEYSVTGARA--GLHCRRTI 255
            YG YTY +L+RE YWPS      S+TGA    G H  R +
Sbjct:   11 YGEYTYAELEREQYWPSE-KLRISITGAGGFIGSHIARRL 49          
BLAST of EY702814 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.367e-18
Identity = 63/191 (32.98%), Postives = 86/191 (45.03%), Query Frame = 2
Query:  284 HYVLASDWNKIDHMTDDMICLEFHPAHLRHMHNCFENYSRGRPCLQPCCSYGRNGL--HNYLPLWHSCITIP*SSLCMPYASTITG*NNLFYASSACIYPQSTPIVKLTLSLKEV*CLCR*SSPCL*PAEPPQMKRSVDTTPTT**FSDLIQHSPK*I-------------RPFCTFQSGKGTTPAAFCQK 811
            HY++ASDW K +HMT+DM C EFH   LR M NC +  +            G  G    N+  + ++   I   S  M  A+ I G    FYASSACIYP+   + +  +SLKE             PAE PQ    ++   T     +L +H  K                PF T++ G+   PAAFC+K
Sbjct:   54 HYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI---SFNMLEAARINGVKRFFYASSACIYPEFKQL-ETNVSLKESDAW---------PAE-PQDAYGLEKLAT----EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK 226          

HSP 2 Score: 35.4242 bits (80), Expect = 8.367e-18
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  142 YGAYTYKDLDREPYWPSY*APEYSVTGARA--GLHCRRTI 255
            YG YTY +L+RE YWPS      S+TGA    G H  R +
Sbjct:   11 YGEYTYAELEREQYWPSE-KLRISITGAGGFIGSHIARRL 49          
BLAST of EY702814 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.500e-16
Identity = 64/193 (33.16%), Postives = 86/193 (44.56%), Query Frame = 2
Query:  284 HYVLASDWNKIDHMTDDMICLEFHPAHLRHMHNCFENYSRGRPCLQPCCSYGRNGL--HNYLPLWHSCITIP*SSLCMPYASTITG*NNLFYASSACIYPQSTPIVKLTLSLKEV*CLCR*SSPCL*PAEPPQMKRSVDTTPTT**FSDLIQHSPK*I-------------RPFCTFQSGKGTTPAAFCQKIL 817
            HY++ASDW K +HMT+DM C EFH   LR M NC +  +            G  G    N+  + ++   I   S  M  A+ I G    FYASSACIYP+   +    +SLKE             PAE PQ    ++   T     +L +H  K                PF T++ G+   PAAFC+K L
Sbjct:   47 HYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI---SFNMLEAARINGVKRFFYASSACIYPEFKQL-DTVVSLKESDAW---------PAE-PQDAYGLEKLAT----EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAL 221          

HSP 2 Score: 30.8018 bits (68), Expect = 1.500e-16
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  151 YTYKDLDREPYWPSY*APEYSVTGA 225
            YTY +L++EPYWP +     S+TGA
Sbjct:    7 YTYVELEKEPYWP-FEKLRISITGA 30          
The following BLAST results are available for this feature:
BLAST of EY702814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME_ARATH9.624e-2033.51GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME1_ORYSI6.435e-1832.98GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ8.367e-1832.98GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ1.500e-1633.16GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-E11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702814 ID=EY702814; Name=EY702814; organism=Citrus sinensis; type=EST; length=948bp
ACTGGTCGCCTGCTTATACCGGTCCGGATTCCTTCCTCGACCCACGCGTC
CGAGGCATTCTTCTCCTCCTCAATCTTCTCCTCTTCATTATACTCTCCAC
TCTCAGGAGTATTCTCTCAATGATAAGCACATCATCGAACCTATGGCGCC
TACACCTATAAAGACCTCGATAGGGAACCTTACTGGCCTTCCTATTAAGC
TCCGGAATATTCTGTCACTGGGGCCAGAGCCGGTCTTCATTGCCGTCGCA
CCATATGCTACTAATCTCTGAAGAGTGACATGCCATTACGTTCTTGCTTC
TGACTGGAATAAAATTGACCACATGACTGACGATATGATCTGTCTTGAAT
TCCACCCTGCTCACCTTAGGCACATGCACAATTGCTTCGAAAATTACTCA
CGGGGGAGACCATGTCTCCAACCTTGCTGCTCATATGGGAGGAATGGGCT
TCATAACTATCTGCCACTCTGGCATTCATGTATAACAATACCATGATCTT
CTCTCTGCATGCCCTATGCTTCTACGATCACTGGATGAAATAACCTCTTC
TATGCCTCTAGTGCCTGCATCTATCCCCAATCTACGCCCATCGTGAAACT
AACCCTAAGCTTGAAAGAAGTCTGATGCCTGTGCCGCTGATCCTCGCCAT
GCTTATAGCCTGCAGAACCTCCGCAAATGAAGAGATCTGTTGATACTACT
CCCACAACTTAGTAATTCAGTGACCTGATCCAACATTCCCCAAAATAAAT
ACGGCCTTTTTGTACTTTTCAAAGTGGAAAGGGAACCACTCCTGCTGCTT
TTTGCCAAAAGATCCTACCTCCCCTCCCAAACGTACCAAGGTTGCAGATG
GACTTTAACACGATCTTTCCCTTCCTTGATGCACCCCAATACAGTCCCCT
CCCATTGACTATATCACACCTCCCTTAGCCAAACACCTTCGTTACCCA
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