EY649649

Overview
NameEY649649
Unique NameEY649649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6927 contig Csv1_Contig6927:1..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649649 vs. ExPASy Swiss-Prot
Match: PDS5_SCHPO (Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.889e-12
Identity = 36/129 (27.91%), Postives = 72/129 (55.81%), Query Frame = 3 
Query:  327 LLDKVEHLLANVEQAPSRSM-RDALLPTMKGLITNDLLRHSXMDVRLLVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHF 707
            +L ++  LL  +      ++ RD++LP  + L+ N+LL H    +R     CI E+ R+ APD+P+    +++ FQ+ +     L +    YY +   IL++++ V+S +L++DL   ++ +V +F+ F
Sbjct:   23 ILKRLRDLLGELTSLSQDTIDRDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLF 151
[Close]
BLAST of EY649649 vs. ExPASy Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae GN=PDS5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 42/148 (28.38%), Postives = 77/148 (52.03%), Query Frame = 3 
Query:  285 LLLNPP--SPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMK----GLITNDLLRHSXMDVRLLVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHF 707
            L  N P  S  D++I+  + ++ L A  E+  S    +  L  +      L++  LL+H  + +R     C+S+I R+ APD+PY D  + + F+L +S FE L      Y+++   ++  + + RS +L+ DL   + L++E+F  F
Sbjct:    9 LKFNSPIISTSDQLISTNELLDRLKALHEELASLDQDNTDLTGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIF 156
The following BLAST results are available for this feature:
BLAST of EY649649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PDS5_SCHPO3.889e-1227.91Sister chromatid cohesion protein pds5 OS=Schizosa... [more]
PDS5_YEAST4.300e-1128.38Sister chromatid cohesion protein PDS5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-H12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649649 ID=EY649649; Name=EY649649; organism=Citrus sinensis; type=EST; length=892bp
GTGGGCTAGTTACTAGTTAGTAAAGCAACTGAGCGAGCAACTAAGGCAAG
TGCGTGCTAGTGTTTTGTTTAATAAGCTATAAATGAGTCAGTTTCTTCGT
GGGTTTTCGATAAAAATCCAAACTTTTCATTTTGCAATGACTTGAGGAGG
GTGAAAAAAAGATGGCTTTTTAGTTGTCTTCCAGGATTTGCTTCTAGGGT
TTTTGTGTTTGAGTTAGGAAAGTGAAAATGGGTTCTTCAAAGAGAGAGAT
TGAGCTTGAGGAGCAACTTAAGGATGCTGGCAACTTGCTTCTCAACCCGC
CATCTCCTGTTGATGAAGTTATTAATCTACTTGATAAAGTTGAGCACTTG
CTTGCAAATGTGGAGCAAGCACCATCAAGATCAATGCGAGATGCTCTTCT
ACCAACAATGAAGGGATTAATTACAAATGATCTTTTGAGACACTCANACA
TGGATGTGAGGTTGTTAGTAACATCTTGCATTAGTGAGATTACCAGAATA
ACAGCACCAGATTCTCCCTATGATGATGAACTAATGAAGGAATTCTTTCA
ACTGGCTGTATCAGCTTTTGAAAACTTGTCCCATGCATCTGGTCGCTATT
ATATGAAGGCACTATCCATTCTTGACACTGTTGCTAAGGTTAGGTCATGC
TTGCTGATGTTGGACCTTGAGTGCGACAAATTGGTCGTTGAGATGTTTCA
ACATTTCCTAAAGTCACCANGTCCAACCATCCGCATTTTGTATTTGCGGC
CATGGAGACNATTATGACCCTTGTCATCGATGAAAGTGAAGATGTTTCCT
GGGATCTTCTCCGTATTCTTTTGGCTAGTGTCCGAAAGGAGAATCANGAT
GTCTCTCCTACTTCTTGGAGCTAGNAGAGAAGGTTTCACTAA
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