EY649646

Overview
NameEY649646
Unique NameEY649646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649646_ssr141 microsatellite EY649646_ssr141:141..150. BLAST: Citrus ESTs to Prunus persica proteins V1
EY649646_ssr751 microsatellite EY649646_ssr751:751..760. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 2.496e-68
Identity = 111/153 (72.55%), Postives = 126/153 (82.35%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRVQLKRIENKINRQVTFSKRRAG LKKAHEISVLCDAEVA+++FSHKGKLFEYSTDSCMEKILERYERY+YAERQLIAP+ +   NW +E N LKAKI+LL++NQ                 RHYLGEDL+++S K++Q LEQQLDTAL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQ-----------------RHYLGEDLQAMSPKELQNLEQQLDTAL 136          

HSP 2 Score: 60.8474 bits (146), Expect = 2.496e-68
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HIR+RKNQLM ESI+ELQKKEK+I+E   +L KQIKEREK
Sbjct:  137 KHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREK 177          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.254e-68
Identity = 111/153 (72.55%), Postives = 126/153 (82.35%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRVQLKRIENKINRQVTFSKRRAG LKKAHEISVLCDAEVA+++FSHKGKLFEYSTDSCMEKILERYERY+YAERQLIAP+ +   NW +E N LKAKI+LL++NQ                 RHYLGEDL+++S K++Q LEQQLDTAL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQ-----------------RHYLGEDLQAMSSKELQNLEQQLDTAL 136          

HSP 2 Score: 60.077 bits (144), Expect = 3.254e-68
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HIRSRKNQLM +SI+ELQ+KEK+I+E   +L KQIKEREK
Sbjct:  137 KHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREK 177          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.020e-63
Identity = 107/155 (69.03%), Postives = 125/155 (80.65%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDP--ESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRV+LKRIENKINRQVTFSKRR G LKKA EISVLCDAEV++I+FSHKGKLFEYS++SCMEK+LERYERY+YAERQLIAPD    +Q NW +E + LKAKI+LL++NQ                 RHYLGE+LE +SLKD+Q LEQQL+TAL
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQ-----------------RHYLGEELEPMSLKDLQNLEQQLETAL 138          

HSP 2 Score: 56.9954 bits (136), Expect = 1.020e-63
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKERE 759
            +HIRSRKNQLM ES++ LQ+KEK I+E   +L KQIKERE
Sbjct:  139 KHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERE 178          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.568e-61
Identity = 99/153 (64.71%), Postives = 120/153 (78.43%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+ DSCME+ILERYERY++AE+QL+  D  S  +W LE   LKA++++LQ+NQ                 +HY+GEDLESLS+K++Q LE QLD+AL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQ-----------------KHYVGEDLESLSMKELQNLEHQLDSAL 136          

HSP 2 Score: 60.4622 bits (145), Expect = 4.568e-61
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAAHKLSGGIKXKTSSHTLFF 825
            +HIRSRKNQLM ESIS LQKK+++++E  + L K++KEREK +A ++SG       +HT F+
Sbjct:  137 KHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREK-SAQQISGINSSSLFAHTDFY 197          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.150e-59
Identity = 98/153 (64.05%), Postives = 120/153 (78.43%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+ DSCME++LERYERY++AERQL+  D  S  +W LE   LKA++++LQ+NQ                 +HY+GEDLESL++K++Q LE QLD+AL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQ-----------------KHYVGEDLESLNMKELQNLEHQLDSAL 136          

HSP 2 Score: 55.0694 bits (131), Expect = 4.150e-59
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAAHK 777
            +HIRSRKNQLM ESIS LQK++++++E  + L K++KEREK  A +
Sbjct:  137 KHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQ 182          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.659e-58
Identity = 98/160 (61.25%), Postives = 121/160 (75.62%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEVA+I+FS KGKLFEYSTDSCME+ILERY+RY Y+++QL+  D     NW LE   LKA++++L+KN+                 R+++GEDL+SLSLK++Q LE QLD A+ +    K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNK-----------------RNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRK 143          

HSP 2 Score: 52.373 bits (124), Expect = 2.659e-58
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  646 IRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAAHKLSGGIKXKTSSHTL 819
            IRSRKNQ M ESIS LQKK+K++++  + L+K+IKEREK    +    ++   SS  L
Sbjct:  139 IRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVL 196          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.002e-57
Identity = 98/160 (61.25%), Postives = 120/160 (75.00%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEVA++IFS KGKLFEYSTDSCMEKILERY+RY Y+++QL+  D     NW LE   LKA++++L+KN+                 R+++GEDL+SLSLK++Q LE QL  A+ +    K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNK-----------------RNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRK 143          

HSP 2 Score: 52.373 bits (124), Expect = 1.002e-57
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:  646 IRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAAHK 777
            IRSRKNQ M ESIS LQKK+K +++  + L+K+IKEREK   H+
Sbjct:  139 IRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQ 182          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.412e-57
Identity = 98/153 (64.05%), Postives = 121/153 (79.08%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG+VQLKRIENKINRQVTFSKRR+G LKKA+EISVLCDAEVA+IIFS KGKL+EY+TDSCM+KILERYERY+YAE+ LI+ + ++Q NW  E   LKAK++ +QK Q                 +H +GEDLESL+LK++QQLEQQL+ +L
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQ-----------------KHLMGEDLESLNLKELQQLEQQLENSL 136          

HSP 2 Score: 51.9878 bits (123), Expect = 6.412e-57
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HIRSRK+QLM ESI+ELQ+KEKS++E   +L K++ E++K
Sbjct:  137 KHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQK 177          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.421e-56
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRVQLKRIENKINRQVTFSKRR+G LKKAHEISVLCDAEV +I+FS KGKLFEY+TDSCME++LERYERY++AE+QL+  D  S  +W LE   LKA++++LQ+N++                  Y+GEDLESL++K++Q LE QL +AL
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKL-----------------YVGEDLESLNMKELQNLEHQLASAL 136          

HSP 2 Score: 53.5286 bits (127), Expect = 1.421e-56
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HIRSRKNQLM ESIS LQK++++++E  + L K++KEREK
Sbjct:  137 KHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREK 177          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.094e-56
Identity = 96/153 (62.75%), Postives = 120/153 (78.43%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG+VQLKRIEN INRQVTFSKRR+G LKKA+EISVLCDAEVA+IIFS KGKL++Y+TDSCM+KILERYERY+YAE+ LI+ + ++Q NW  E   LKAK++ +QK Q                 +H +GEDLESL+LK++QQLEQQL+ +L
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQ-----------------KHLMGEDLESLNLKELQQLEQQLENSL 136          

HSP 2 Score: 51.9878 bits (123), Expect = 9.094e-56
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HIRSRK+QLM ESI+ELQ+KEKS++E   +L K++ E++K
Sbjct:  137 KHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQK 177          
The following BLAST results are available for this feature:
BLAST of EY649646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AP1_ARATH2.496e-6872.55Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AP1_SINAL3.254e-6872.55Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH1.020e-6369.03Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL8_SOLLC4.568e-6164.71Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLTU4.150e-5964.05Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH2.659e-5861.25Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL1.002e-5761.25Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSJ6.412e-5764.05MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_SOLCO1.421e-5662.09Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD14_ORYSI9.094e-5662.75MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649646 ID=EY649646; Name=EY649646; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGANAAGAAGAAATCCTTTTATGAGATATTAGATTTGGGTT
TCTGTTTTTGGAGGGGCTTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAA
AAAAAAAAGAATAGAAATTATCAAATAATCTGTGTGAGACAGAGAGAGAG
TGAGACAGATCATACAGAAGAATTCATAACAATGGGAAGAGGTAGGGTTC
AGCTGAAGAGAATAGAGAACAAGATCAATCGCCAAGTTACCTTTTCCAAA
CGGAGAGCTGGCTTCTTGAAGAAAGCTCATGAGATCTCTGTGTTATGTGA
TGCTGAAGTTGCTGTTATTATCTTCTCTCACAAAGGGAAGCTCTTTGAAT
ACTCCACTGACTCTTGCATGGAAAAGATACTGGAACGCTATGAGAGGTAC
GCCTATGCTGAGAGACAGCTGATTGCCCCTGATCCTGAATCACAGCGTAA
CTGGCCCCTGGAGTGCAACAACCTTAAGGCTAAGATAGATCTTCTGCAGA
AAAACCAAAGATGTTCTTCCAAAAGTACATTCTACACTGGTTCTCAAATT
GACCTCTTCAGGCACTATTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAA
AGACATCCAACAGTTGGAGCAACAGCTGGACACCGCTCTCAACACATCAG
ATCAAGAAAAAATCAACTCATGCCAGAGTCCATCTCTGAGCTTCAGAAAA
AAGAAAAGTCTATAGAGGAGCCANNACACTTGCTGGTAAAGCAGATTAAG
GAGAGAGAGAAGGCTGCAGCGCACAAGCTCAGTGGGGGGATCAAATNCAA
AACCAGTTCCCACACATTATTCTTCTACTTNCCAGCCACTNNCTGCTTAG
ACTGGGCGGTGCCTACCAGACAGGCATCGA
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