EY649623

Overview
NameEY649623
Unique NameEY649623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.599e-23
Identity = 60/165 (36.36%), Postives = 74/165 (44.85%), Query Frame = 2
Query:  149 TDGIDATNLTAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKI 643
            T  +       VITG  +GIG ETAR LA R                    I  +   ++V   KLDLS   SI+ FA+ F                M CPY  + DG E  F  NH+GHFLLT LLL+ +  +A       R+VNLSSIAH     G IRF  +
Sbjct:   32 TTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAHLI---GKIRFHDL 188          

HSP 2 Score: 40.0466 bits (92), Expect = 6.599e-23
Identity = 19/57 (33.33%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALLQ 825
            R +G  +TA +VHPG++++ + ++S ++    + FS F +K+  QGA T+ + AL +
Sbjct:  217 RLQGTGVTAYAVHPGVVLSEITRNSYLLCLLWRLFSPF-FKSTSQGAQTSLHCALAE 272          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.891e-22
Identity = 58/154 (37.66%), Postives = 73/154 (47.40%), Query Frame = 2
Query:  182 VITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKI 643
            VITG  +GIG ETAR LA R                    I  +   ++V   KLDLS   SI+ FA+ F                M CPY  + DG E   A NH+GHFLLT+LLL  +  +A       R+VNLSS+AH   + G IRF  +
Sbjct:   43 VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESA-----PARVVNLSSVAH---HLGKIRFHDL 188          

HSP 2 Score: 39.6614 bits (91), Expect = 1.891e-22
Identity = 20/57 (35.09%), Postives = 34/57 (59.65%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALLQ 825
            R +G  +T  +VHPG++ + L +HS ++    + FS FL K   +GA T+ + AL +
Sbjct:  217 RLKGTGVTTYAVHPGIVRSKLVRHSFLLCLLWRLFSPFL-KTTWEGAQTSLHCALAE 272          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.165e-22
Identity = 56/165 (33.94%), Postives = 74/165 (44.85%), Query Frame = 2
Query:  149 TDGIDATNLTAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKI 643
            T  +       V+TG  +GIG ETA+ LA R                  + I       +V   KLDLS   SI+ FA+ F                M CPY  + DG EM    NH+GHFLLT+LLL+ +  +A       RIVN+SS+AH   + G I F  +
Sbjct:   34 TSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNVSSLAH---HLGRIHFHNL 190          

HSP 2 Score: 41.9726 bits (97), Expect = 4.165e-22
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALLQ 825
            R +G  +T  SVHPG + + L +HS+ +      FSFF+ K   QGA T+ + AL +
Sbjct:  219 RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFI-KTPQQGAQTSLHCALTE 274          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.628e-21
Identity = 55/165 (33.33%), Postives = 76/165 (46.06%), Query Frame = 2
Query:  149 TDGIDATNLTAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKI 643
            T  +      A++TG  +GIG ETA+ LA R                  + I      ++V   KLDL+   SI+ FA++F                M CPY  + DG EM    NH+GHFLLT+LLL+ +  +A       RIVNLSS+ H   + G I F  +
Sbjct:   31 TSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNLSSLGH---HLGRIHFHNL 187          

HSP 2 Score: 38.1206 bits (87), Expect = 2.628e-21
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALLQ 825
            R +G  +T  SVHPG + + L ++S+ +MR+L    F   K   +GA T+ Y AL +
Sbjct:  216 RLKGSGVTTYSVHPGTVHSELTRYSS-IMRWLWQLFFVFIKTPQEGAQTSLYCALTE 271          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 7.525e-21
Identity = 55/155 (35.48%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  155 GIDATNL-----TAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAH 604
            G+  TN+       VITG  +GIG ETAR LA R                    I  +   ++V   KLDLS   SI+ FA+ F                M CPY  + DG E     NH+GHFLLT LLL+ +  +A       R+VN+SS+AH
Sbjct:   29 GVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSA-----PARVVNVSSVAH 178          

HSP 2 Score: 40.4318 bits (93), Expect = 7.525e-21
Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALLQ 825
            R +G  +T  +VHPG++ + L +HS+++    + FS F+ K   +GA T+ + AL +
Sbjct:  217 RLQGTGVTTYAVHPGVVRSELVRHSSLLCLLWRLFSPFV-KTAREGAQTSLHCALAE 272          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.441e-18
Identity = 61/190 (32.11%), Postives = 80/190 (42.11%), Query Frame = 2
Query:   77 GIVSLITGRPGSSGFGSASTAEQVTDGIDATNLTAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKIN 646
            G   LITG   +SG G A+ AE +  G        VI G       E A     R+                 +LI++E          LDL+S+ S++ F Q                    CPY  +EDG EMQF  NH+GHFLLTNLLL  +  +A       RIV +SS  ++Y   G I F  +N
Sbjct:   43 GKTVLITG--ANSGLGRATAAELLRLG------ARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRE----------LDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSA-----PSRIVVVSSKLYKY---GDINFDDLN 206          

HSP 2 Score: 43.8986 bits (102), Expect = 1.441e-18
Identity = 21/57 (36.84%), Postives = 32/57 (56.14%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLW---KNVPQGAATTCYVA 816
            R EG N+T N +HPG++ TNL +H  + +     F+   W   K   +GA T+ Y+A
Sbjct:  234 RLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLA 290          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.120e-18
Identity = 44/117 (37.61%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  296 QLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKIN 646
            QL++KE          LDL+S+ S++ F Q                    CPY  +EDG EMQF  NH+GHFLLTNLLL  +  +A       RIV +SS  ++Y   G I F+ +N
Sbjct:  106 QLVVKE----------LDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSA-----PSRIVVVSSKLYKY---GEINFEDLN 204          

HSP 2 Score: 43.1282 bits (100), Expect = 4.120e-18
Identity = 21/57 (36.84%), Postives = 32/57 (56.14%), Query Frame = 1
Query:  655 REEGVNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLW---KNVPQGAATTCYVA 816
            R EG N+T N +HPG++ TNL +H  + +     F+   W   K   +GA T+ Y+A
Sbjct:  232 RLEGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLA 288          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 58/157 (36.94%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  176 TAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKIN 646
            T ++TG  +GIG +TA  LA R                  + I  E    RV   +LDL+S+ SI++FA+                  M CP+  +EDG EMQF  N++GHFLLTNLLLD +  +A       RI+NLSS+AH     G I F+ +N
Sbjct:   40 TVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH---VAGHIDFEDLN 188          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 58/157 (36.94%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  176 TAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKIN 646
            T ++TG  +GIG +TA  LA R                  + I  E     V+   LDL+S+ SI++FA                   M CP+  +EDG EMQF  NH+GHFLLTNLLLD +  +A       RI+NLSS+AH     G I F  +N
Sbjct:   40 TVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH---VAGHIDFDDLN 188          
BLAST of EY649623 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  119 FGSASTAEQVTDGIDATNLTAVITGGASGIGLETARVLALRKXXXXXXXXXXXXXXXXKQLILKEDDTARVDTLKLDLSSIASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGK 661
            +  ++TA ++  G D T    V+TG  SGIG ETA+  AL                     IL+E   A+V+ + LDL+ + S++ FA+ F                   P+ +++DG+E  F  NH+GHF L  LL D + R+A       R++ +SS +H        RF  IND  GK
Sbjct:  107 YDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH--------RFTDINDSLGK 274          
The following BLAST results are available for this feature:
BLAST of EY649623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RDH12_MOUSE6.599e-2336.36Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH12_BOVIN1.891e-2237.66Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH11_HUMAN4.165e-2233.94Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH11_MOUSE2.628e-2133.33Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH12_HUMAN7.525e-2135.48Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH14_HUMAN1.441e-1832.11Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
RDH14_MOUSE4.120e-1837.61Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
RDH13_MOUSE1.772e-1736.94Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH13_HUMAN3.023e-1736.94Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
WWOX_HUMAN8.796e-1730.94WW domain-containing oxidoreductase OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-F08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649623 ID=EY649623; Name=EY649623; organism=Citrus sinensis; type=EST; length=881bp
CTTATTAGGAAGATTGAGGTTATATTTATTAAATATATTTTTCCTTTTGG
TTGTATCTGAGTGATCTAAGCAGATGGGTATCGTCTCTTTGATAACAGGA
AGGCCTGGCTCAAGTGGGTTTGGTTCAGCTTCCACTGCTGAGCAGGTTAC
TGATGGGATTGATGCAACCAATCTCACTGCTGTCATCACAGGAGGGGCAA
GTGGAATTGGCTTGGAGACAGCAAGGGTCTTGGCTCTACGTAAAGCTCAT
GTTATTATTGCTGCAAGAAACATGGCAGCTGCAAATGAAGCAAAACAGCT
TATTCTAAAAGAAGATGACACTGCTCGTGTTGATACTCTGAAACTTGATC
TTTCCTCTATTGCTTCTATTAAAGATTTTGCTCAGAACTTCATTGCTCTT
AATCTTCCCCTCAACATCTTAATAAACAATGCTGGAATCATGTTCTGTCC
CTACCAGATTTCTGAAGATGGAATAGAGATGCAATTTGCAACAAATCATA
TTGGGCATTTTCTTTTAACAAATTTGCTTCTGGACACAATGAATCGCACG
GCTAAAGAAACGGGTATTGAGGGCAGGATAGTGAATCTATCATCAATAGC
CCACCAATACACATACAAAGGTGGGATTCGGTTTCAGAAGATCAATGACA
GGGCCGGGAAGAGGGAGTGAATATCACAGCAAATTCAGTTCATCCGGGGC
TAATAATGACGAATCTTTTCAAGCATTCTGCTGTTGTGATGAGATTTTTG
AAATTTTTCTCATTCTTCCTGTGGAAAAATGTACCTCAGGGGGCAGCCAC
AACGTGCTATGTAGCTCTACTCCAAATCTGAAGGGCGTACCGGAAAAATA
TTCCTGGNACTGCATGAGATGCCGCCAGTGC
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