EY649609

Overview
NameEY649609
Unique NameEY649609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649609 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.588e-32
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  625 KWMLSKGSGATMGTYDPLLLAFDKDHKADEAQSWWNMILHTHTRYI 762
            KWMLSKG GATMGTYD LLLAFD D +ADEA+S WNMILHTHTR I
Sbjct:  155 KWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSI 200          

HSP 2 Score: 55.4546 bits (132), Expect = 1.588e-32
Identity = 26/49 (53.06%), Postives = 29/49 (59.18%), Query Frame = 3
Query:  429 VSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQV 575
            +S LPNEK AVYGAL+KW AWE EFP               QW RVIQ+
Sbjct:  105 LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQL 153          

HSP 3 Score: 43.8986 bits (102), Expect = 1.588e-32
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  338 EQHLWQKRDSAGSGQKALNLVRI 406
            E HLW+K DSAGSGQKALNLVR+
Sbjct:   82 EHHLWKKNDSAGSGQKALNLVRM 104          
BLAST of EY649609 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.515e-14
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  622 TKWMLSKGSGATMGTYDPLLLAFDKDHKADEAQSWWNMILHTHTRYI*SVCFRD--DLFFRSHDWQKKY*SICKLGEPGVNPMRYWEEMRVPSKIGQIPPKL 921
            TKWMLSKG G TMGTY  LL A  +D++ DEA+  WN +   H        F     ++++    QK +     + E GV P      + + S +G++  KL
Sbjct:  114 TKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKP-----NVAIVSMVGKVFVKL 210          

HSP 2 Score: 43.1282 bits (100), Expect = 2.515e-14
Identity = 21/60 (35.00%), Postives = 31/60 (51.67%), Query Frame = 3
Query:  396 LSELVQLLKCQVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQV 575
            +S+  +++ C +  L N K  VYGALD + AWE EFP               +W ++IQV
Sbjct:   55 ISKAAKMIAC-IKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQV 113          
The following BLAST results are available for this feature:
BLAST of EY649609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP322_ARATH1.588e-3282.61Pentatricopeptide repeat-containing protein At4g18... [more]
PP332_ARATH2.515e-1434.31Pentatricopeptide repeat-containing protein At4g21... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649609 ID=EY649609; Name=EY649609; organism=Citrus sinensis; type=EST; length=921bp
GTTTTGCCCGTAAATGTAATTGAAAACCATCTGGTAAATTGAAAATTGTA
GCTTGGAGCTTGCCCTTTCATTCTTTGTGAAGCATAATGCCGAGAAATGA
GAGTGGGAGGTTTGAATGATTTGTCGGAGTTCATGGGTGATGGGTTTTGG
GTTTTCAAATAGCTGCAGAATTCCCCCATTGCAAACTGCGTCCGGTTTTT
CTCTTCTCACAACTAAGCTGGCAACTAGCAATCCCCATCTCAAGTGCTTT
CTCAATCAAAATAAACAACCACCAGTATCTAATTCCAATGCCAATGCCTC
AAAGAAGAACAAATTAGTAGTGAAGGTGGGAAAGAAAGAGCAACACTTGT
GGCAGAAAAGGGATTCTGCTGGGTCTGGGCAGAAGGCCCTCAATCTTGTC
AGAATTGGTGCAACTCTTGAAATGTCAGGTTTCTGAGCTTCCTAATGAGA
AACATGCTGTTTATGGAGCACTGGATAAATGGACAGCTTGGGAGACAGAG
TTTCCATTGATTGCAGCAGCTAAGGCTTTAAGAATTCTTAGGAAAAGGGG
TCAATGGTTGCGTGTCATTCAAGTATAACACTTTAACTCACTTGATATTG
GTGTGCTTGTGCTTCTCTGGTACAAAATGGATGTTGAGCAAGGGGTCAGG
AGCCACAATGGGAACATATGACCCACTTTTACTAGCATTTGACAAGGATC
ATAAGGCAGATGAGGCCCAATCATGGTGGAATATGATTTTACATACGCAT
ACTCGATACATCTAAAGCGTTTGTTTCCGAGATGATCTTTTTTTCCGATC
TCATGACTGGCAAAAAAAATATTGAAGTATTTGCAAATTGGGAGAACCTG
GGGTTAACCCAATGAGATACTGGGAGGAAATGCGAGTGCCTTCAAAAATT
GGCCAGATTCCACCCAAACTG
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