EY649608

Overview
NameEY649608
Unique NameEY649608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY649608 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.156e-13
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 2 
Query:  263 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSXWG 670
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G S  G
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGG 242
[Close]
BLAST of EY649608 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 2 
Query:  263 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSXWG 670
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G S  G
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGG 235
The following BLAST results are available for this feature:
BLAST of EY649608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.156e-1332.61Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN2.816e-1331.88Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-E04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649608 ID=EY649608; Name=EY649608; organism=Citrus sinensis; type=EST; length=921bp
AGCTGCATTCTTTGATCCTTTCTCCTTGAGCTCCCAAAAATTGCCATTAC
TATTTCTTCCCAATGCACTAACCTGGGCTCCTTTTGCAAACTCTTTAAAC
TAGTCCCATTTGCAATTGTTTTTTTTGCCTCATTTCAGAATGGTTGCTGC
AAGAATGGGCCAATGGTTGAATCTTTTAGTATGTGCACTCATATTACTGA
AAGCTGACGGCTTTAATGTAGGAATCACATATGTTGAGAATGCTGTAGTG
AAAGGAGCTGTTTGTTTGGATGGTAGCCCGCCTGCTTACCATTTTGATAA
GGGGTTTGGTGCTGGGATCAATAATTGGTTGGTTCACATTGAGGGAGGAG
GATGGTGCAACAATGTCACAACTTGTCTTGAACGTAAGAAAACCCGTTTA
GGTTCATCTAAGCAAATGGTCAAGGTAGTTGCATTCTCTGGGATGCTGAG
CAACAAGCAAAAATTTAACCCAGACTTCTACAATTGGAATAGAATCAAGG
TTAGATACTGTGATGGGGCATCGTTTACTGGAGATGTGGAGGCTGTCAAT
CCAGCAAATAACCTTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCAT
GGAGGATCTAATGGCTAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTT
CTGGCTGCTCANCTTGGGGGATTGACTTCAATTTTTGCATTGTGATAACT
TCCGAGCTCTCTTCCCTGGGGGTCCAAAGTAAAATGCTTTGCAAATGCTG
GGTATTTTTTCCACCCGAAGGATGTTTCTGGACCAAGCCACATGGGCCTT
TTTTGCTCAAGGGGCGGAACCATGGGTCACTAACCTTTGGCACCTCCTGG
ATTTAAAATGAGCCCAGAACTGGTTTCCTTCCCAAATCTTGGGACGGGGA
ATACAACCCCTTTTTAATTAA
back to top