EY702794

Overview
NameEY702794
Unique NameEY702794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY702794 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.639e-24
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 2 
Query:   56 AACGAPIVGDSMYMPSAIAQLSSPGLNPFGKCQKEYASDDD-KEMAPIEWISQHGMEPTVAIGLQACHISW--DAGECCYEARSPRWR 310
            AACGAP+VGDSMYMP+AIA++ +P  NP+GK +K Y  +++ KE A  EWI +HG EP V IGLQAC ISW  D GE  YEA +P WR
Sbjct:  385 AACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
[Close]
BLAST of EY702794 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.543e-16
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 2 
Query:   56 AACGAPIVGDSMYMPSAIAQLSSPGLNPFGKCQKEYASDDDKEMAPIEWISQHGMEPTVAIGLQACHISWD-AGE-CCYEARSPRWRRN 316
            AA G PIVGDS YM +A+A + +P +NPFG+  + Y S+D+K  A   WIS HG EP   IGLQA  ISWD  GE   Y+A  P WR++
Sbjct:  382 AAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWRQD 470
The following BLAST results are available for this feature:
BLAST of EY702794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUS6_ARATH7.639e-2460.23RNA pseudourine synthase 6, chloroplastic OS=Arabi... [more]
PUS6_ORYSJ1.543e-1651.69RNA pseudourine synthase 6, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-C12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702794 ID=EY702794; Name=EY702794; organism=Citrus sinensis; type=EST; length=895bp
CCACTCATCATATCTTTTCACTATNCCGAGACTCTTAGTCGACCCACGCG
TCCGGGCTGCCTGTGGCGCACCGATTGTGGGTGACTCTATGTACATGCCA
TCTGCCATTGCACAGTTGTCCAGCCCTGGGCTTAATCCCTTTGGCAAATG
CCAGAAAGAATACGCAAGTGATGATGATAAAGAAATGGCTCCGATTGAGT
GGATTTCACAGCATGGAATGGAACCCACTGTCGCTATTGGTCTGCAAGCA
TGTCATATCTCATGGGATGCTGGCGAGTGCTGTTATGAGGCTAGATCCCC
TCGGTGGAGACGCAACTGTACTGTACGTTCTGGCGCATGAAGATCACTGA
TACTCCACTCCTTCCTCAGACCTCAACGCGACGGATAGCCCGCCAAAGAC
AGAATCCACATAGAAACAAACTACACTTGGAGCCCATTTGGCAACGCTAG
CGCACAGACAACCGACCCTGACCGCGTGCCCCTTGGGAGAACTCCAACTC
CTGATGTACCGGAAGGCAACGCCCCCATCCACTCACCGAAGCACCTCCCT
CACCACCGTCTCGGAGTCTCTCTCCCCTTCTGCATCAGGACAATGGCTTA
CGCCCTACCATCGCCGCCCTCATCCATCTGACCCCCCTCTGAGATATGTG
CACGAATAACCCTGACTGGTCACAAAACAACCCCCCCGCCACCTCTGGCC
CATTACCTTGACGCCTCGCTCCCTCATCCCCCCCTTACGCGACATGGCCA
TTGGCGCCCTCCCGGCTGGTTTTCACGTCCCACCACCGCCACCCGCCCCG
ACACACTGCCCTCCGCCCCTCCCGGTCTCGACCTTCCTCACCCGAGCCGC
CCACACCCCTCCCCTCTGTAATTGCCACCCCCCACACCACAGACC
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