DY306875

Overview
NameDY306875
Unique NameDY306875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306875 vs. ExPASy Swiss-Prot
Match: SYA_ARATH (Alanyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 1 
Query:    4 KIALLQNQVRKAQKKVAEENLQXXXXXXXXXXXXXXSNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLXXXXXXXXXXXXXXXXTDAAQVTPAMDLAAEFAAMKL 450
            KIA LQN+VRKAQKK+AE+NL+              S+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAVVCAGVPEKSDQ K L+V+EWLT AL PL                TDA+QV  A+D+A+ FA+MKL
Sbjct:  854 KIASLQNEVRKAQKKIAEQNLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFASMKL 1002
The following BLAST results are available for this feature:
BLAST of DY306875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYA_ARATH2.134e-4059.06Alanyl-tRNA synthetase, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2DB07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306875 ID=DY306875; Name=DY306875; organism=Citrus sinensis; type=EST; length=790bp
GCTAAGATTGCGTTACTTCAGAATCAAGTGAGGAAGGCGCAAAAGAAGGT
TGCTGAAGAAAATCTTCAGAAAGCTGTCAAGGTGGCAACTGAGACGGCTG
AAGCTGCTGCTTCAAATGGAAAACCCTTCTGCATCTCTCGTGTTGAGGTT
GGATTGGATGCAGCTGCAGTTCGTGAGGCAGTTCTGAAAGTCATAGAGCA
GAAGGGCATGCCGGTCATGGTCTTCAGTACCGATGAAACCACGAATAAGG
CTGTCGTATGTGCAGGTGTACCAGAGAAATCAGACCAGAGCAAACAGTTG
GAGGTGTCAGAGTGGTTGACAGCAGCTTTGCAGCCACTGAAAGGGAGGTG
TGGTAAAGGTAAAGGAGGTCTTGCTTCTGGACAGGGAACAGATGCGGCCC
AAGTGACCCCAGCCATGGATTTGGCAGCAGAATTTGCGGCAATGAAATTG
AGGTGACCAAAGGATTTTTAAGTTTGTCTTTCCAGAAATATGATGTTGCT
GCTCGTCATGAACATCTACTGAAGTATTATTGAAACACGAAAGGAAACAG
AAGAATATAGGAAAATGATTAGGGGTGTTTATATCAGCCAGGAAATTAAA
AAGCAATTGCTACTGAACATTATTATACTGTATACATCATTGTTGATCAT
CTATCTATTTAAATTGCTGTTGGACGAGGGGGGGGGGAAAAAAAAAGAAA
AAAAAGAAAAGAAAAGAAAAAAAGCCTCCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAGTAGAATCTAAATACAATTTCCTTGCCCCT
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