DY306874

Overview
NameDY306874
Unique NameDY306874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1237
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 1.311e-78
Identity = 147/173 (84.97%), Postives = 154/173 (89.02%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 568
            MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 3.813e-78
Identity = 146/173 (84.39%), Postives = 154/173 (89.02%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 568
            MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.958e-74
Identity = 135/152 (88.82%), Postives = 143/152 (94.08%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 8.228e-73
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.552e-71
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MVKYS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.570e-58
Identity = 113/152 (74.34%), Postives = 128/152 (84.21%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M KYS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 1.559e-55
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 1.559e-55
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 2.036e-55
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 2.036e-55
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of DY306874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL172_ARATH1.311e-7884.9760S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH3.813e-7884.3960S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE1.958e-7488.8260S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU8.228e-7386.8460S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU1.552e-7184.8760S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA2.570e-5874.3460S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_HUMAN1.559e-5569.7460S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA1.559e-5569.7460S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT2.036e-5569.7460S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE2.036e-5569.7460S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BH01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306874 ID=DY306874; Name=DY306874; organism=Citrus sinensis; type=EST; length=1237bp
GAGCAAACCCACTTCACTGATACAGAGGCAGCATCCAAAATCAGCCACCA
TGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTGCAAAGCC
AGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAACTGCCCA
TGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATG
TTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTT
GGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATG
GCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGA
GTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCAC
ATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCA
TGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCT
TATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCA
ACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAG
AGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACC
TTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGT
TTATTTCATATTAAGTCCAGTTTACTGTTTTGTTAGAATCCTCAGTCATA
CTGTTGGAGCTTTATGAAAATTAAAGACTTTTTCAGCTTATTTTGAAGCT
TAGAGATATGGGTGTATGAATTTGTCATTCCAAACCAATTTCATTATCCA
CTAATCGAATCTAATAACTTGTATTGAATTGGTCCGGTTAAACTTCCTTG
TGAGAAATTTATTTGTAAAAAAAAAAAAAAAAAAACTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAGTGGATCCAAATAACAATTCCCCTGGC
CCTCCTTTTTAAACACTCCTGAACGGGGAAAAACCCCGGGCGTTCCCCCA
CTTTAACTCCCCTTTCCCCCCCCCTCCCCCCCTTTTCCCCCCCCGGGGGC
CTAAAAAACCAAAAAAAGCCCCCCCCCCCCTTTCTCCCCCTCCCCCCCCA
ACTTTTCGGCCCCCCCCCCCGCAAAAGGGGCGAAAAAAGGGGGAAAAAAT
TTTGTTAAAAACCAGCCTTTATATAAAATTTTTTTTG
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