DY306200

Overview
NameDY306200
Unique NameDY306200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1271
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.435e-19
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  208 IQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.435e-19
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  210 IQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.099e-19
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  213 IQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.211e-18
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PTV +T+ H+ S   CPVC++ + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  212 IQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.581e-18
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  209 IQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.698e-18
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I A+PT++IT+ H+     CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  209 IQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I ++PTV +TQ  + +   CPVC++ + +  + RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  210 ITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.637e-15
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 197
            I ++PTV +TQ  +     CPVC++ + +  E RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  209 ITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.086e-14
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 200
            ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of DY306200 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.265e-14
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    6 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 200
            ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
The following BLAST results are available for this feature:
BLAST of DY306200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RN126_XENTR5.435e-1953.13RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN5.435e-1957.81RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN7.099e-1957.81RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN126_MOUSE1.211e-1856.25RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA1.581e-1853.13RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA2.698e-1851.56RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN115_MOUSE1.637e-1548.44RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN115_HUMAN1.637e-1550.00RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_XENTR3.086e-1447.69E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA5.265e-1447.69E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DH02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306200 ID=DY306200; Name=DY306200; organism=Citrus sinensis; type=EST; length=1271bp
CTGCAATTGATGCTATGCCCACCGTTAGGATCACACAGAGGCATCTCCGT
TCTGATTCGCACTGTCCAGTTTGCCAAGATAAATTCGAGCTGGGGTCTGA
AGCTAGACAAATGCCATGTAACCATATATACCACTCAGATTGTATTGTGC
CATGGCTAGTGCAGCACAACTCATGTCCTGTATGTCGCCAAGAATTACCA
CTGCAAGGGTCAAGTAGCAGTCGTATTCATCAAAGCTCAAGTGGTCAAAG
TCGAAGCACCACTTTTGGTAGTAATGGCAACGGAAGGGAGAATCAAGGAA
GACGGAATTTGTTCTCTGGTTTCTGGCCGTTCCGATCTTCGAATTCAAGC
TCTAATCACAATGGAACAACTGAAAGCAGTTCACCAGCAATGCACGAGAA
TAACCCTCACATGGGGTATTCCGGATGGCCATTTGATTAAAGACTAGAAG
TCAGTGTGTTAATAAATTGTTCATGATAAGTCGGTGTCTCAATTGATACC
AAAAAGGACTTCTTAAAACTTTGGAATTGGTTGGGACATTGAAATCTACA
AGTCCAGTGTGTCTCTTAAAAGAGTAATTGGGTGTCGTTTGTGTTCTACC
GTCTTTTATGTAAATTATACTTCCCTTTTTTGTGTTTTTCAGTTGTATCT
GCAGCTATCGTGCAAAATTTCCCGTAGTTTTTAATTCTTACAAAAAAAAA
AAAAAAACTCGAGGGGGGGCCCCGGTACCACATTTCCCCAAAGTTTGGAA
TGTAATACAATTACATGGGCCGTCGTTTTCCAAACTTTCGGGAAGTGGAG
AAACCTTGGGCATTACCGCACAATCAACCCCATGGACCCACCTCCCTCTG
TTCCGCCAGGGGGCGAACGAGCAATCAGGGCCCGCAACCGCTTGGCTCTC
ACCACCNATTCCGCTCCCCCTAAGGGGGCACNGGGTCATGCCGTACGATG
CGCCAATCGGGTGACGTCCCCNTTGAGCAAGTTGATTAACCGNNCCNNGN
TNTGTGNGGGNAGGGGCGCGATANCACCGAAANCCCGTTAGAGAAACNGT
GGGAGAACGCTCGCGACAGGGNGCTGCCGTANTGCACNCATAGGGGATCC
GNAGGCGTCCAAAACCGAGATNAGAAGGGCCGCGACATCCCNGTGGAGNA
GTGGGTGGTNACCGNTCGGTTGTNAGAGGNGCGCGCGAGGAGACGACAGC
ACCCCCTTACTAACNANTCGCNGGATGTTAATTATTAAATATCATGTCGG
TATGACGCTGATNNTGGGGCA
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