DY306198

Overview
NameDY306198
Unique NameDY306198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1231
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 3.208e-101
Identity = 205/343 (59.77%), Postives = 227/343 (66.18%), Query Frame = 2
Query:    2 GVSSDPNLDGLDEQQKRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG--XXXXXXXXXXXXXXXXXXXARQGTLDDHLRELRTGHAVGSGWGGTSRTRDIXXXXXXXXXXXXFSTFPSRTPPVGELQRHQASVDPLCRGPTHFLANLPGLGNDPRALIWDFVFKGSPR*KGGLESYPGETRLGGKNGTMAGGSSSPPREGFAFA 1024
            G SSDP  DG DEQQKRSEIYTYE+PWHIYAMNWSVRRDKKYRLAI SLLEQYPNRVEIVQLD+S GEIR+DPNLSFEHPYPPTKTIFIPDKECQ+PDLLATSSDFLR+WRI+D+  RVELKS LN NKNSE+CGPLTSFDWNEAEPRRIGTSS DTTCTIWDIEREAVDTQLIAHDKEV+DIAWG                         T+     E  T   V  GW                        FP+   PV ELQRHQASV+ +   P H   ++   G+D +ALIWD    G    +GGL+     T  G +   +   SS P     AF+
Sbjct:    2 GTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDT-PLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPAL--PVVELQRHQASVNAIAWAP-HSSCHICTAGDDSQALIWDISSMGQ-HVEGGLDPILAYT-AGAEIEQLQWSSSQPDWVAIAFS 338          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 3.216e-93
Identity = 189/340 (55.59%), Postives = 222/340 (65.29%), Query Frame = 2
Query:    8 SSDPNLDGLDEQQKRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW-GXXXXXXXXXXXXXXXXXXXARQGTLDDHLRELRTGHAVGSGWGGTSRTRDIXXXXXXXXXXXXFSTFPSRTPPVGELQRHQASVDPLCRGPTHFLANLPGLGNDPRALIWDFVFKGSPR*KGGLESYPGETRLGGKNGTMAGGSSSPPREGFAFA 1024
            SSD   +G +EQ KRSEIYTYE+PW IYAMNWS+RRDKKYRLAI SL+EQYPNRVEIVQLD+S GEIR+DPNL FEHPYPPTKT FIPDKECQ+PDLLATSSDFLR+WRISD++ RVELKS L+ +KNSE+ GP+TSFDWNEAEPRRIGTSSIDTTCTIWDIERE VDTQLIAHDKEVYDIAW G                    ++ +   +     +   V   W                        FP+   PV ELQRHQASV+ +   P H  +++   G+D +ALIWD    G    +GGL+     T  G +   +   SS P     AF+
Sbjct:    4 SSDQIQNGSEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPAL--PVVELQRHQASVNAIAWAP-HSSSHICSAGDDSQALIWDISSMGQ-HVEGGLDPILAYT-AGAEVEQLQWSSSQPDWVAIAFS 338          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.007e-75
Identity = 96/178 (53.93%), Postives = 127/178 (71.35%), Query Frame = 2
Query:   35 DEQQKRSEIYTYESPWHIYAMNWS-VRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPD--KECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWG 559
            D   +     TY+SP+ +YAM +S +R    +R+A+ S LE Y NR++I+  D  +  ++  PNLSFEHPYPPTK +F P   +     DLLA+S DFLR+W I+++   VE  S+LN +K SE+C PLTSFDWN+ EP+R+GT SIDTTCTIWDIE+  V+TQLIAHDKEV+DIAWG
Sbjct:    7 DSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWG 184          

HSP 2 Score: 51.9878 bits (123), Expect = 5.007e-75
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYESSEPDTPLVRV 683
            R+FDLRDKEHSTIIYES +PDTPL+R+
Sbjct:  199 RIFDLRDKEHSTIIYESPQPDTPLLRL 225          

HSP 3 Score: 49.2914 bits (116), Expect = 5.007e-75
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  682 LGWNKQDPRYMATIIMDSAKVVVLDLSFPNPP 777
            L WNKQD RYMATI+MDS KVV+LD+  P  P
Sbjct:  225 LAWNKQDLRYMATILMDSNKVVILDIRSPTMP 256          

HSP 4 Score: 40.817 bits (94), Expect = 5.007e-75
Identity = 30/87 (34.48%), Postives = 39/87 (44.83%), Query Frame = 2
Query:  764 SRTPPVGELQRHQASVDPLCRGPTHFLANLPGLGNDPRALIWDFVFKGSPR*KGGLESYPGETRLGGKNGTMAGGSSSPPREGFAFA 1024
            S T PV EL+RHQASV+ +   P        G G+D +ALIW+      P     +  Y      G +   +   SS P   G AFA
Sbjct:  252 SPTMPVAELERHQASVNAIAWAPQSCKHICSG-GDDTQALIWELPTVAGPNGIDPMSVYSA----GSEINQLQWSSSQPDWIGIAFA 333          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.236e-62
Identity = 102/181 (56.35%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   47 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----------VDTQLIAHDKEVYDIAW 556
            KR EIY YE+PW +YAMNWSVR DK++RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDTTCTIW +E              V TQLIAHDKEVYDIA+
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAF 182          

HSP 2 Score: 43.1282 bits (100), Expect = 1.236e-62
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  682 LGWNKQDPRYMATIIMDSAKVVVLDLSFPNPP 777
            L WNKQDP Y+AT+ MD  +VV+LD+  P  P
Sbjct:  227 LCWNKQDPNYLATMAMDGMEVVILDVRVPCTP 258          

HSP 3 Score: 31.5722 bits (70), Expect = 1.236e-62
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYESSEPDTPLVRV 683
            R+FDLR  EHSTIIYE  +   PL+R+
Sbjct:  202 RMFDLRHLEHSTIIYEDPQ-HHPLLRL 227          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.236e-62
Identity = 102/181 (56.35%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   47 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREA-----------VDTQLIAHDKEVYDIAW 556
            KR EIY YE+PW +YAMNWSVR DK++RLA+ S +E+Y N+V++V LD+ + E       +F+HPYP TK ++IPD +   PDLLATS D+LRVWR+ + + R+E   LLN NKNS++C PLTSFDWNE +P  +GTSSIDTTCTIW +E              V TQLIAHDKEVYDIA+
Sbjct:    6 KRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFIC--RNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLEC--LLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAF 182          

HSP 2 Score: 43.1282 bits (100), Expect = 1.236e-62
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  682 LGWNKQDPRYMATIIMDSAKVVVLDLSFPNPP 777
            L WNKQDP Y+AT+ MD  +VV+LD+  P  P
Sbjct:  227 LCWNKQDPNYLATMAMDGMEVVILDVRVPCTP 258          

HSP 3 Score: 31.5722 bits (70), Expect = 1.236e-62
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYESSEPDTPLVRV 683
            R+FDLR  EHSTIIYE  +   PL+R+
Sbjct:  202 RMFDLRHLEHSTIIYEDPQ-HHPLLRL 227          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 7.845e-62
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 2
Query:   47 KRSEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 556
            ++  IYTY SPW IY ++WS R ++ +RLAI S LE Y NRV+++QL++ T +        FEHPYPPTK ++IPDK   +PDLLAT+ D+LR+W +    R ++LKSLL  N  SE+C PL+SFDWNE +P  + TSSIDTTCTIW+IE     TQLIAHDKEV+DIA+
Sbjct:    2 EKKRIYTYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEVV--CGFEHPYPPTKCMWIPDKNSNRPDLLATTGDYLRLWEVGSNQRSIKLKSLLT-NVISEFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAF 168          

HSP 2 Score: 45.8246 bits (107), Expect = 7.845e-62
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  682 LGWNKQDPRYMATIIMDSAKVVVLDLSFPNPP 777
            L WNKQDP Y+ATI  DS KV++LD+  P+ P
Sbjct:  210 LCWNKQDPNYLATIQQDSPKVIILDIRVPSVP 241          

HSP 3 Score: 31.9574 bits (71), Expect = 7.845e-62
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYESSEPDTPLVRV 683
            R+FDLR+ EHSTIIYE+     PL+R+
Sbjct:  185 RMFDLRNLEHSTIIYETPS-FVPLLRL 210          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.862e-23
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 2
Query:   68 YESPWHIYAMNWSVRRDKKYR---LAIASLLEQYPNRVEIVQL---DDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPD--LLATSSDFLRVWRISDE---DRRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAW 556
            Y +PW  +A++W   +  KY    +A+ SL E+  N +++++L   DD    +      + +  YP TK ++ P       D  LLA++   LR+W+   E   D  +  ++ L+ +  +    PLTSFDW + +P  I  SS+DTTCT+WDI  +   TQLIAHDKEVYD+A+
Sbjct:   47 YNAPWIPFALDWL--KQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEK-AQAATDLEYPVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAF 217          

HSP 2 Score: 29.261 bits (64), Expect = 5.862e-23
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYE 650
            R+FDLR  +HSTIIYE
Sbjct:  235 RMFDLRSLDHSTIIYE 250          
BLAST of DY306198 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.765e-21
Identity = 56/183 (30.60%), Postives = 97/183 (53.01%), Query Frame = 2
Query:   53 SEIYTYESPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSTGEIRADPNLSFEHPYPPTKTIFIPDKECQKPDLLATSSDFLRVWRISDEDRRVELK---SLLNGNK----------NSEYCG---PLTSFDWNEAEPRRIGTSSIDTTCTIWDIE-REAVDTQLIAHDKEVYDI 550
            + +  Y+S + ++ ++WS        + + S  E   N+++++  +D    +  +  +  +  YP +K  ++P +    P  LAT SD LR+W +S E+R+ + +   SL   N+          + +  G   P+TSFDWN  +   I +SSIDTTC +WD++    V TQLIAHD EV+D+
Sbjct:  120 ASVCEYQSHYPLFGLDWSADD----YVCLGSYKEDSRNKLQVLHSNDL---LSWESVVDADVVYPVSKIQWVPSQ--LYPRKLATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVIGTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDV 293          

HSP 2 Score: 29.261 bits (64), Expect = 7.765e-21
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  603 RVFDLRDKEHSTIIYE 650
            RVFDLR   HSTIIYE
Sbjct:  313 RVFDLRSLAHSTIIYE 328          

HSP 3 Score: 29.261 bits (64), Expect = 7.765e-21
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  700 DPRYMATIIMDSAKVVVLDLSFPNPP 777
            DP  +AT   DS K+++LD+  P  P
Sbjct:  361 DPNVLATFAADSNKIIILDMRNPESP 386          
The following BLAST results are available for this feature:
BLAST of DY306198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LWD1_ARATH3.208e-10159.77WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH3.216e-9355.59WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
TTG1_ARATH5.007e-7553.93Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
DCAF7_MOUSE1.236e-6256.35DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN1.236e-6256.35DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI7.845e-6255.29DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO5.862e-2335.63Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST7.765e-2130.60WD repeat-containing protein YPL247C OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3DG11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306198 ID=DY306198; Name=DY306198; organism=Citrus sinensis; type=EST; length=1231bp
GGGCGTGAGTAGTGACCCGAATCTCGACGGGTTGGACGAGCAGCAAAAAA
GATCCGAGATCTATACCTATGAGTCACCGTGGCACATCTACGCCATGAAC
TGGAGCGTCCGTCGCGACAAGAAGTACCGACTCGCTATCGCCAGCCTCCT
CGAGCAGTACCCGAACCGGGTCGAAATTGTTCAGCTGGATGATTCCACTG
GCGAGATCCGTGCCGACCCCAACCTCTCTTTCGAACACCCGTACCCGCCT
ACCAAAACCATTTTCATACCCGACAAGGAGTGCCAAAAACCCGACCTTTT
GGCCACCTCCAGCGATTTCCTCCGCGTGTGGAGAATCTCCGACGAGGACC
GGCGCGTGGAGCTCAAGAGTTTGTTGAATGGTAACAAGAACAGCGAATAC
TGCGGCCCGCTGACCTCGTTTGACTGGAACGAAGCGGAACCGAGGCGAAT
TGGGACGTCTAGTATCGACACCACGTGTACGATTTGGGATATCGAGAGAG
AAGCCGTCGATACGCAGCTTATCGCTCACGATAAAGAGGTTTACGACATC
GCGTGGGGGCGGTGTCGGCGTTTTCGCCTCCGTCTCCGCTGATGGGTCCG
TTAGAGTTTTCGATTTGCGCGACAAGGAACACTCGACGATCATTTACGAG
AGCTCCGAACCGGACACGCCGTTGGTTCGGGTTGGGGTGGAACAAGCAGG
ACCCGAGATATATGGCGACCATAATAATGGACAGCGCGAAGGTGGTGGTT
CTCGACCTTTCCTTCCCGAACCCCCCCGGTTGGGGAACTGCAGAGGCACC
AGGCGAGTGTGGACCCCCTTTGCCGGGGCCCCACACATTTCCTGGCCAAT
TTGCCAGGGCTGGGGAATGACCCAAGGGCGTTGATATGGGACTTTGTCTT
CAAGGGGTCCCCCCGGTGAAAGGGGGGGTTGGAATCTTATCCTGGGGAAA
CCCGGTTGGGGGGGAAAAATGGAACCATGGCCGGTGGTTCGTCCTCCCCA
CCCCGGGAGGGGTTTGCCTTTGCCTTTTCCCCCCAAACCTTTTCAAAATT
CCCAGGGGGTGATGAGAAGAGGAAAAGGGAGAAAACCGCCCCCGCGGGGA
AAAAATCGATATTTTTTTTTGTTGAAATAAAAAAAAAAAAATCGTTGTTT
CTTGTAATCACAAACGCCGGTGGAAACACCCCCCTCCCTCTGTAGTGTTT
ATTTTTTTGTGTGTGATTGCTGTAAGCATTG
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