DY306187

Overview
NameDY306187
Unique NameDY306187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.116e-61
Identity = 119/137 (86.86%), Postives = 128/137 (93.43%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQIMITPPVFGRGGGR 488
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  + P VFGR  GR
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVFGRPAGR 137          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 5.538e-61
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQIMITP-PVFGRGGGRRY 494
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  + P   FG    RRY
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFGGRAPRRY 140          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 7.232e-61
Identity = 120/138 (86.96%), Postives = 128/138 (92.75%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQIMITPPVFGRGGG 485
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ +   P +GRGGG
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSYGRGGG 138          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 2.104e-60
Identity = 122/141 (86.52%), Postives = 128/141 (90.78%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQIMITP-PVFGRG-GGRRY 494
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  + P P FG G   RRY
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAFGGGRAPRRY 141          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 2.748e-60
Identity = 120/137 (87.59%), Postives = 125/137 (91.24%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQIMITPPVFGRGGGR 488
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ     P+   GGGR
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQ-QAMAPIAAFGGGR 136          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.200e-39
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 431
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.674e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 413
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.674e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 413
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.674e-39
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQI 449
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
BLAST of DY306187 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 3.493e-39
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 3
Query:   78 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQI 449
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
The following BLAST results are available for this feature:
BLAST of DY306187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS173_ARATH1.116e-6186.8640S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS172_ARATH5.538e-6187.1440S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS17_SOLLC7.232e-6186.9640S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS171_ARATH2.104e-6086.5240S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS174_ARATH2.748e-6087.5940S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS17B_SCHPO1.200e-3967.8040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA2.674e-3966.9640S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN2.674e-3966.9640S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_BOVIN2.674e-3962.1040S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG3.493e-3962.1040S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DF07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306187 ID=DY306187; Name=DY306187; organism=Citrus sinensis; type=EST; length=496bp
GATTTTTCTTGTCGGTCTGTTGTTTAAAAGAAACTTCTTCCCTATTTGCA
GCAGCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGAC
CGTGAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGA
CACTGGACTTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTATCATC
CCCTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGAT
GAAGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGG
AAGAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATT
AAGACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGC
TCTTGGCATGTCCGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGATCA
TGATTACTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTG
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