EY680138

Overview
NameEY680138
Unique NameEY680138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680138_ssr14 microsatellite EY680138_ssr14:14..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.364e-73
Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEGK*WQSRWVTVTLCILKKDLTRSLRRRL 628
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH            +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYE            + +  K ++R LRR+L
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHV--KQISRELRRKL 184          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.102e-72
Identity = 128/158 (81.01%), Postives = 137/158 (86.71%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H             K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYE
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYE 158          

HSP 2 Score: 22.7126 bits (47), Expect = 3.102e-72
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 1
Query:  568 GYCNFMH 588
            GYCNFMH
Sbjct:  166 GYCNFMH 172          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 8.937e-69
Identity = 117/158 (74.05%), Postives = 135/158 (85.44%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H            SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A  A   L GRFY+GRPIIV++SPVTDFREATCRQ+E
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFE 158          

HSP 2 Score: 23.8682 bits (50), Expect = 8.937e-69
Identity = 20/65 (30.77%), Postives = 28/65 (43.08%), Query Frame = 1
Query:  568 GYCNFMHFEERFNQEPKEAIGLAEARKKPLPVQSISPYPS*STG-------WL*RKLYMGGGLGF 741
            GYCNFMH ++   +  ++  G    R +    +S SP P    G          R  Y GGG G+
Sbjct:  166 GYCNFMHVKQIGRELRRKLYG---GRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGY 227          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.510e-69
Identity = 128/191 (67.02%), Postives = 145/191 (75.92%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEGK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKH 643
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG  +DP KIQ              SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYE            + +  K++ R LR+RL    H
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHV--KEIGRDLRKRLFGHLH 189          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47
Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE G+  +  +      +  K ++R LRR L  ++  K+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47
Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE G+  +  +      +  K ++R LRR L  ++  K+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47
Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE G+  +  +      +  K ++R LRR L  ++  K+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.385e-46
Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYE 159          

HSP 2 Score: 23.8682 bits (50), Expect = 3.385e-46
Identity = 9/29 (31.03%), Postives = 13/29 (44.83%), Query Frame = 1
Query:  568 GYCNFMHFEERFNQEPKEAIGLAEARKKP 654
            G+CNFMH         ++  G    R+ P
Sbjct:  167 GFCNFMHLRPISRDLRRQLYGRGPRRRSP 195          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 6.632e-46
Identity = 96/190 (50.53%), Postives = 122/190 (64.21%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRL 628
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y  P       D       +   ++Q+H              KYGEIE +N+CDNL DH+VGNVY++FR E  A  A  +LN R++ GRP+  + SPVTDFREA CRQYE G+  +S +      +  K ++R LRR L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNF---MHLKPISRELRRYL 187          
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.493e-46
Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 2
Query:   71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYE 159          

HSP 2 Score: 21.9422 bits (45), Expect = 7.493e-46
Identity = 8/29 (27.59%), Postives = 12/29 (41.38%), Query Frame = 1
Query:  568 GYCNFMHFEERFNQEPKEAIGLAEARKKP 654
            G+CNFMH         ++  G     + P
Sbjct:  167 GFCNFMHLRPISRNLRRQLYGRGPRHRSP 195          
The following BLAST results are available for this feature:
BLAST of EY680138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
U2AFB_ARATH6.364e-7371.51Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH3.102e-7281.01Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFB_ORYSJ8.937e-6974.05Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AFA_ORYSJ9.510e-6967.02Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AF1_MOUSE2.693e-4750.00Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_HUMAN2.693e-4750.00Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_BOVIN2.693e-4750.00Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF4_BOVIN3.385e-4654.72Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]
U2AF1_DROME6.632e-4650.53Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF4_RAT7.493e-4654.72Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-G12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680138 ID=EY680138; Name=EY680138; organism=Citrus sinensis; type=EST; length=861bp
CCCGCGTCCGAACGAGAGAGAGAGAGAGCAAAATCATTGAGCACATCAGA
GTCTCAGCAGAGAGGGGAGTATGGCGGAGCACTTAGCTTCAATATTCGGA
ACCGAAAAGGACAGAGTAAACTGTCCGTTCTATTTCAAGATCGGCGCGTG
CAGGCACGGCGATCGATGCTCTCGGCTTCATACGAAGCCCAGCATCAGCC
CCACACTCCTCCTCTCCAACATGTACCAACGCCCCGACATGATCACTCCC
GGCGTTGACCCGCAGGGCCAGGCCCTTGACCCTCGCAAGATCCAAGATCA
CTTCGAGGATTTTTACGAGGATCTGTTCGAGGAACTAAGCAAGTACGGCG
AGATTGAGAGCTTGAACATCTGTGACAATTTGGCCGATCACATGGTCGGT
AACGTGTATGTTCAGTTTAGAGAAGAAGAACATGCTGCTAATGCTCTTCG
CAATCTCAATGGGAGGTTCTATGCAGGGCGCCCCATCATTGTCGACTTCT
CTCCTGTCACGGATTTTCGGGAAGCTACTTGTAGGCAGTACGAGGGAAAA
TGATGGCAATCCAGGTGGGTTACTGTAACTTTATGCATTTTGAAGAAAGA
TTTAACCAGGAGCCTAAGGAGGCGATTGGTTTGGCAGAAGCACGGAAAAA
ACCCCTCCCCGTCCAAAGCATAAGCCCCTATCCCTCCTAAAGTACCGGGT
GGTTATGAAGGAAGCTTTACATGGGGGGGGGGCTTGGGTTCTGGGAATAA
AAGATTAACGCCGGGCTCTCCCCCCCCCCTTTGGCTGAGGCCAGGGGGGG
CTGAAAACGCAAACCCCGGGTAACCCTAGCGGGGAGATCAAGGAAGAAAC
CCCCGGTACCA
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