EY680138
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 6.364e-73 Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEGK*WQSRWVTVTLCILKKDLTRSLRRRL 628 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYE + + K ++R LRR+L Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHV--KQISRELRRKL 184
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 3.102e-72 Identity = 128/158 (81.01%), Postives = 137/158 (86.71%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYE Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYE 158 HSP 2 Score: 22.7126 bits (47), Expect = 3.102e-72 Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 1 Query: 568 GYCNFMH 588 GYCNFMH Sbjct: 166 GYCNFMH 172
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 8.937e-69 Identity = 117/158 (74.05%), Postives = 135/158 (85.44%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A A L GRFY+GRPIIV++SPVTDFREATCRQ+E Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFE 158 HSP 2 Score: 23.8682 bits (50), Expect = 8.937e-69 Identity = 20/65 (30.77%), Postives = 28/65 (43.08%), Query Frame = 1 Query: 568 GYCNFMHFEERFNQEPKEAIGLAEARKKPLPVQSISPYPS*STG-------WL*RKLYMGGGLGF 741 GYCNFMH ++ + ++ G R + +S SP P G R Y GGG G+ Sbjct: 166 GYCNFMHVKQIGRELRRKLYG---GRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGY 227
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 9.510e-69 Identity = 128/191 (67.02%), Postives = 145/191 (75.92%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEGK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKH 643 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG +DP KIQ SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYE + + K++ R LR+RL H Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHV--KEIGRDLRKRLFGHLH 189
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47 Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE G+ + + + K ++R LRR L ++ K+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3) HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47 Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE G+ + + + K ++R LRR L ++ K+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47 Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRLVWQKHGKN 652 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE G+ + + + K ++R LRR L ++ K+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNF---MHLKPISRELRRELYGRRRKKH 193
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 3.385e-46 Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H KYGEIE +N+CDNL DH+VGNVYV+FR EE A A+ LN R++ G+ + + SPVTDFRE+ CRQYE Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYE 159 HSP 2 Score: 23.8682 bits (50), Expect = 3.385e-46 Identity = 9/29 (31.03%), Postives = 13/29 (44.83%), Query Frame = 1 Query: 568 GYCNFMHFEERFNQEPKEAIGLAEARKKP 654 G+CNFMH ++ G R+ P Sbjct: 167 GFCNFMHLRPISRDLRRQLYGRGPRRRSP 195
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 6.632e-46 Identity = 96/190 (50.53%), Postives = 122/190 (64.21%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE-GK*WQSRWVTVTLCILKKDLTRSLRRRL 628 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y P D + ++Q+H KYGEIE +N+CDNL DH+VGNVY++FR E A A +LN R++ GRP+ + SPVTDFREA CRQYE G+ +S + + K ++R LRR L Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNF---MHLKPISRELRRYL 187
BLAST of EY680138 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 7.493e-46 Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 2 Query: 71 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYE 544 MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H KYGEIE +N+CDNL DH+VGNVYV+FR EE A A+ LN R++ G+ + + SPVTDFRE+ CRQYE Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYE 159 HSP 2 Score: 21.9422 bits (45), Expect = 7.493e-46 Identity = 8/29 (27.59%), Postives = 12/29 (41.38%), Query Frame = 1 Query: 568 GYCNFMHFEERFNQEPKEAIGLAEARKKP 654 G+CNFMH ++ G + P Sbjct: 167 GFCNFMHLRPISRNLRRQLYGRGPRHRSP 195 The following BLAST results are available for this feature:
BLAST of EY680138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >EY680138 ID=EY680138; Name=EY680138; organism=Citrus sinensis; type=EST; length=861bpback to top |