DY306150

Overview
NameDY306150
Unique NameDY306150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1284
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306150 vs. ExPASy Swiss-Prot
Match: RH48_ARATH (Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.027e-13
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 3 
Query:  177 MGGGPRTYPGGVSKWQWXXXXXXXXXXXXXXXXCRERQIYEMRKRAELKAAVSELERPWEAVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 473
            MGGGPRT+PGG++KWQW                 +E+Q+YE R R E++A +       E   K+      +S  E +K LADRF + G  D W E+DGP
Sbjct:   26 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125
[Close]
BLAST of DY306150 vs. ExPASy Swiss-Prot
Match: RH33_ARATH (Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.647e-13
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 3 
Query:  177 MGGGPRTYPGGVSKWQWXXXXXXXXXXXXXXXXCRERQIYEMRKRAELKAAVSELERPWEAVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 473
            MGGGPRT+PGG++KWQW                 +E+Q+YE R R E++A +       E   K       +S  E +K LADRF + G  DLW ++DGP
Sbjct:   76 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGHPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175
The following BLAST results are available for this feature:
BLAST of DY306150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH48_ARATH2.027e-1339.00Probable DEAD-box ATP-dependent RNA helicase 48 OS... [more]
RH33_ARATH2.647e-1339.00Putative DEAD-box ATP-dependent RNA helicase 33 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3DA12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306150 ID=DY306150; Name=DY306150; organism=Citrus sinensis; type=EST; length=1284bp
GGCAAAATTGAATGCCCTCAATTCTGCAAATGGCTCTCTCAATAACAGCT
TCTTCAGCTTCTGTGCTATCTTTCTCACAATCACTATCATCACCGACCCA
ACTCTTCCTCTCCAACAGACCCACCCACGTTTCTTTCAACAACCACCACC
ACCACCCAAAATCAACAGTAATCCGAATGGGAGGTGGGCCCCGCACGTAT
CCAGGCGGGGTCTCAAAGTGGCAGTGGAAGCGTATGCAAGCCAAGAAAGC
CAAGCAGCTCCTCAAAGCCCGCCTCTGCCGCGAGAGACAAATCTACGAGA
TGCGAAAGAGAGCCGAACTCAAAGCCGCCGTTTCCGAGCTCGAGCGCCCC
TGGGAGGCCGTCGAAAAAGCCCCCAACCTCTTCTCTGTCAGTGCCGACGA
GCAAGTCAAAGTCTTGGCCGACCGGTTTCAAAGACCCGGCGGTTTTGACC
TCTGGACCGAAAGCGACGGCCCGCAATTGTTCGAGACCCCCGACGGGTTG
CCTTCTGCTAGGTTTTTCCCCAAAGGGGTCGTTCACAGCGTGAAACCCTA
TGGGCTTATTGCGTCGAAGCGCAATGAATTACAGAGTGAAGAAGATAACG
AAGATGGAAATGGGAATTTGCAGGAGGTTTCGAGCACAAATGGATTCAAC
GGAAAGCCGCCGAAAAGATGGAGGAAGAGGGGGAAAAGGAAGCAAAACAA
AGATTAAAATGAATGAAACATTATTTAGATGTAGGACTGTAGAAGGGGGG
GCAAACCCCAAATCATAATTTAACCCCTTAACTCCCCCAAAATACAAATC
TCAGCAGACATAACGAAAGATAATTTCCCGAAAAAACATCTTGTTAACCC
CCCAAGGGAGAATAACAATATATACTCTCATTTTTTTCTGTTATAGAAAC
GGTAACAAAAAGGAGAACGCGAGGGGTATAAACAAGAGTAACGGCGATAT
GCACAGACGAAAAAATCATCTGTAAGAGATTGGGGTGTTATGTTAGNGGC
GGGAGAGTGGTAAACTTAGTTTTCCAGAAANATAGNCGACATAAGAGCCA
TAATAGGCACAATGTGTGCAGGANCAATGTAAAATTATAATATATACGAA
CACATTTGCAATATCTTACAATATGGTTGCGTACTCTTCGAAAAATTAAA
TATAGAGTGATTCTAAGATTACTTGAAGCNTAACTCAAGAGCCACNATAA
ATCACACTGCAACAAAACANAACTTTTTTGTCAAATATAAAAACGANGAG
AAATGGAGATAGTCAAGCTGGTGCACAAATAAAG
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