DY306144

Overview
NameDY306144
Unique NameDY306144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1280
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306144 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 5.219e-78
Identity = 161/268 (60.07%), Postives = 185/268 (69.03%), Query Frame = 1
Query:    7 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVTKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKSTNVRLKDTLTQLRSSRNFXXXXXXXXXXXXXXXXXXNVLK 804
            M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    EKNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE IPD                      IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ+QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KVDRATSDLK+TNVRLKDT+ QLRSSRNF                  NVLK
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAIPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLCIVLGIAAYLYNVLK 266          
BLAST of DY306144 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 8.923e-70
Identity = 141/246 (57.32%), Postives = 175/246 (71.14%), Query Frame = 1
Query:    7 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVTKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKSTNVRLKDTLTQLRSSRNF 738
            M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TEKNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ IPD                      IKFD  S    DD +FQ++EESS FRQEYEMRR KQD+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KVD ATSDLK+TNVRLK  L Q+RSSRNF
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAIPDGNEHGAKQANSDWGGASAPNKNIKFDM-SEEDMDDGFFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQMRSSRNF 245          
BLAST of DY306144 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.988e-69
Identity = 145/245 (59.18%), Postives = 176/245 (71.84%), Query Frame = 1
Query:    7 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVTKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXXIKFDT-YSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKSTNVRLKDTLTQLRSSRNF 738
            M VIDLITRVD+IC            + NV GDDAF+RLY  V+  L+  LQK+E  ++E N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL+AR+DLV +L+D+IE IP+                    I+FDT  S  +   EYFQ T ES  F+QEYEM+R+KQ + LD I EGLDTLKNMA D+NEE+DRQ P+MDEID K+D+A +DLKSTNVRLKDT+T+LRSSRNF
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAIPE---SSAPVVGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQAR-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKLRSSRNF 241          
The following BLAST results are available for this feature:
BLAST of DY306144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH5.219e-7860.07Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP72_ARATH8.923e-7057.32Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
SYP73_ARATH1.988e-6959.18Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3DA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306144 ID=DY306144; Name=DY306144; organism=Citrus sinensis; type=EST; length=1280bp
GAGAAAATGAGTGTGATAGATTTGATCACAAGAGTCGACGCGATTTGCAA
GAAATATGACAAGTACGATGTCGATAAACAAAAAGAGCTCAACGTCTACG
GCGACGACGCTTTCGCTCGCCTGTACGGCGTCGTTCAGGCCGACCTCGAC
GCTGCTCTGCAGAAATCGGAGGCGGCAGCAACAGAGAAAAATCGTGCGAC
GGCAGTTGCGATGAACGCGGAGATACGAAGAACAAAAGCTAGGTTGCTTG
AAGAAGTGACTAAATTACAAAGACTTGCTTTTAAAAAGGTAAAAGGGCTT
TCAAAAGAGGAACTTGAGGCTCGAAGTGACTTAGTTGCTGCTCTCAAAGA
TAGAATTGAAGGGATACCTGATGGTTCAACAGCTGCAGCTAAACAAACTG
GTGGTGGGACAACTTCGGCCTCATACACAGGAATCAAATTTGACACTTAT
TCAGGTGGGAAATTTGATGATGAATATTTCCAAGAAACCGAAGAGTCGAG
TGGGTTTAGGCAAGAGTATGAGATGCGGAGAATGAAACAGGACCAAGGTT
TAGATGTTATAGGGGAAGGTTTGGACACATTGAAGAACATGGCTCATGAC
ATGAATGAGGAAATTGACAGGCAAGTGCCCATGATGGATGAAATTGATGA
AAAGGTTGACAGGGCAACCTCTGATCTGAAAAGTACCAACGTGAGACTCA
AGGATACTCTAACCCAGCTGAGATCCAGTCGAAACTTCTGCATTGATATC
ATCCTCTTGTGCATAATCCTAAGAATTGCTGCCTATTTATACAATGTGTT
AAAGTGATGTTGGGTGGTCAGCCACATCTTCCAAAGGCAGGGTGGTTAAG
GGATGTTGGGGGTTCAACAACTTCTTGGACGAATACCCCACGGTGTATTT
TATTGGACGTGAATTTCCCCGGGGGCCTTTGGGCTTTCCTTTCTATTCTG
GGAACAATTCCAAGTGTTCCCCATAACTTAGGAAATTTCGAATGGTAGGG
TGTATATTTTTCGCCCCCCTCTATCTTTTTTCGGGGCCTATAAGTTTATA
GCAAAAAGCGGGAATGGGACCTTGTGAGTATTTTTCTGGGCGGGGGAGAA
CAATTTTCCCCCCTCTTTGGAGGTTAGGCGGGGAATTAAGAAAAGATGAA
AGGAAAGGAAGAAAAGAAGCGCGCGGGGGGGGGGGGGCCCCGGCGGGGGC
CCCCGTCTAGCGGCCCCCCTCAATTGAGGGTGGGATGGTTTGGGTGTAAT
GGGAAAGTTGTGTCTGGGGGCGGGAGGGGC
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